B.rapa versus A. thaliana: Difference between revisions

From CoGepedia
Jump to navigation Jump to search
Newer edit →
Created page with '[[Image:Master 7043 10179.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ass.ks.png|thumb|800px|right|dotplot between Brassica rapa and Arabidopsis thaliana. Sy...'
 
No edit summary
Line 1: Line 1:
[[Image:Master 7043 10179.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ass.ks.png|thumb|800px|right|dotplot between Brassica rapa and Arabidopsis thaliana. Syntenic gene-pairs are colored by Ks values. Dark red: orthologs; pink: from shared most recent whole genome duplication event; purple: from shared second most recent whole genome duplication event.  Brassica's triploidy is seen by having each region of Arabidopsis thaliana having three dark red regions in B. rapa, while a single region of B. rapa has one dark red region in A. thaliana. Results can be regenerated at http://genomevolution.org/r/nty .]]
[[Image:Master 7043 10179.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ass.ks.png|thumb|800px|left|Syntenic dotplot between Brassica rapa and Arabidopsis thaliana. Syntenic gene-pairs are colored by Ks values. Dark red: orthologs; pink: from shared most recent whole genome duplication event; purple: from shared second most recent whole genome duplication event.  Brassica's triploidy is seen by having each region of Arabidopsis thaliana having three dark red regions in B. rapa, while a single region of B. rapa has one dark red region in A. thaliana. Results can be regenerated at http://genomevolution.org/r/nty .]]
[[Image:Master 7043 10179.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ass.ks.hist.png|thumb|800px|left|Histogram of Ks values between Brassica rapa and Arabidopsis thaliana. Ks values are log transformed, low values on left (little change); high values on right (more change). Peaks correspond to genome duplication events. Colors in this histogram match colors in the syntenic dotplot. Results may be regenerated at http://genomevolution.org/r/nty .]]

Revision as of 16:37, 4 August 2010

Syntenic dotplot between Brassica rapa and Arabidopsis thaliana. Syntenic gene-pairs are colored by Ks values. Dark red: orthologs; pink: from shared most recent whole genome duplication event; purple: from shared second most recent whole genome duplication event. Brassica's triploidy is seen by having each region of Arabidopsis thaliana having three dark red regions in B. rapa, while a single region of B. rapa has one dark red region in A. thaliana. Results can be regenerated at http://genomevolution.org/r/nty .
Histogram of Ks values between Brassica rapa and Arabidopsis thaliana. Ks values are log transformed, low values on left (little change); high values on right (more change). Peaks correspond to genome duplication events. Colors in this histogram match colors in the syntenic dotplot. Results may be regenerated at http://genomevolution.org/r/nty .
Retrieved from "https://genomevolution.org/wiki/index.php?title=B.rapa_versus_A._thaliana&oldid=2860"