Cacao syntenic dotplots: Difference between revisions
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[[Image:Master 8400 10997.CDS-genomic.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.cs1.nsd.png|800px|thumb|right|Syntenic dotplot using [[SynMap]] of Cacao (y-axis) versus Peach (x-axis). Results can be regenerated at http://genomevolution.org/r/2h98]] | [[Image:Master 8400 10997.CDS-genomic.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.cs1.nsd.png|800px|thumb|right|Syntenic dotplot using [[SynMap]] of Cacao (y-axis) versus Peach (x-axis). Results can be regenerated at http://genomevolution.org/r/2h98]] | ||
[[Image:Master 8400 10997.CDS-genomic.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.cs1.png|800px|thumb|right|Syntenic dotplot using [[SynMap]] of Cacao (y-axis) versus Peach (x-axis). Green are syntenic matches, gray is any match. Results can be regenerated at http://genomevolution.org/r/2h9j]] | |||
==Syntenic dotplot between Cacao and Peach genomes== | ==Syntenic dotplot between Cacao and Peach genomes== | ||
The syntenic dotplot shows a strong 1:1 mapping of syntenic regions, and weaker 3:3 mappings of syntenic regions. This is due to the shared [[paleohexaploidy]] event at the base of the eudicots and the lack of subsequent whole genome duplications events in either lineage. | The syntenic dotplot shows a strong 1:1 mapping of syntenic regions, and weaker 3:3 mappings of syntenic regions. This is due to the shared [[paleohexaploidy]] event at the base of the eudicots and the lack of subsequent whole genome duplications events in either lineage. | ||
Revision as of 16:22, 26 January 2011
Syntenic dotplot between Cacao and Peach genomes
The syntenic dotplot shows a strong 1:1 mapping of syntenic regions, and weaker 3:3 mappings of syntenic regions. This is due to the shared paleohexaploidy event at the base of the eudicots and the lack of subsequent whole genome duplications events in either lineage.