Syntenic path assembly: Difference between revisions
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[[Image:Screen shot 2011-02-18 at 1.24.54 PM.png|400px|none|[[SynMap]] analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis). Results may be regenerated at http://genomevolution.org/r/2k70]] | |||
[[Image:Screen shot 2011-02-18 at 1.27.34 PM.png|400px|none|[[SynMap]] analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis) using SynMap's Syntenic Path Assembly to order contigs. Results may be regenerated at: http://genomevolution.org/r/2k71]] | |||
The Syntenic Path Assembly is an option in [[SynMap]] to do a reference genome assembly of contigs using synteny to determine the order and orientation of the contigs. | The Syntenic Path Assembly is an option in [[SynMap]] to do a reference genome assembly of contigs using synteny to determine the order and orientation of the contigs. | ||
<gallery> | |||
[[Image:Screen shot 2011-02-18 at 1.24.54 PM.png|500px|none|[[SynMap]] analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis). Results may be regenerated at http://genomevolution.org/r/2k70]] | [[Image:Screen shot 2011-02-18 at 1.24.54 PM.png|500px|none|[[SynMap]] analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis). Results may be regenerated at http://genomevolution.org/r/2k70]] | ||
[[Image:Screen shot 2011-02-18 at 1.27.34 PM.png|500px|none|[[SynMap]] analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis) using SynMap's Syntenic Path Assembly to order contigs. Results may be regenerated at: http://genomevolution.org/r/2k71]] | [[Image:Screen shot 2011-02-18 at 1.27.34 PM.png|500px|none|[[SynMap]] analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis) using SynMap's Syntenic Path Assembly to order contigs. Results may be regenerated at: http://genomevolution.org/r/2k71]] | ||
</galler> | |||
Revision as of 20:06, 18 February 2011
The Syntenic Path Assembly is an option in SynMap to do a reference genome assembly of contigs using synteny to determine the order and orientation of the contigs. <gallery>
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