Syntenic path assembly: Difference between revisions

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[[File:Screen shot 2011-02-18 at 1.24.54 PM.png|[[SynMap]] analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis).  Results may be regenerated at http://genomevolution.org/r/2k70]]
File:Screen shot 2011-02-18 at 1.24.54 PM.png|[[SynMap]] analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis).  Results may be regenerated at http://genomevolution.org/r/2k70
[[File:Screen shot 2011-02-18 at 1.27.34 PM.png|[[SynMap]] analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis) using SynMap's Syntenic Path Assembly to order contigs.  Results may be regenerated at: http://genomevolution.org/r/2k71]]
File:Screen shot 2011-02-18 at 1.27.34 PM.png|[[SynMap]] analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis) using SynMap's Syntenic Path Assembly to order contigs.  Results may be regenerated at: http://genomevolution.org/r/2k71
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[[File:Screen shot 2011-02-18 at 1.24.54 PM.png|[[SynMap]] analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis).  Results may be regenerated at http://genomevolution.org/r/2k70]]
File:Screen shot 2011-02-18 at 1.24.54 PM.png|[[SynMap]] analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis).  Results may be regenerated at http://genomevolution.org/r/2k70
[[File:Screen shot 2011-02-18 at 1.27.34 PM.png|[[SynMap]] analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis) using SynMap's Syntenic Path Assembly to order contigs.  Results may be regenerated at: http://genomevolution.org/r/2k71]]
File:Screen shot 2011-02-18 at 1.27.34 PM.png|[[SynMap]] analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis) using SynMap's Syntenic Path Assembly to order contigs.  Results may be regenerated at: http://genomevolution.org/r/2k71

Revision as of 20:08, 18 February 2011

The Syntenic Path Assembly is an option in SynMap to do a reference genome assembly of contigs using synteny to determine the order and orientation of the contigs.

  • SynMap analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis). Results may be regenerated at http://genomevolution.org/r/2k70
    SynMap analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis). Results may be regenerated at http://genomevolution.org/r/2k70
  • SynMap analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis) using SynMap's Syntenic Path Assembly to order contigs. Results may be regenerated at: http://genomevolution.org/r/2k71
    SynMap analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis) using SynMap's Syntenic Path Assembly to order contigs. Results may be regenerated at: http://genomevolution.org/r/2k71

File:Screen shot 2011-02-18 at 1.24.54 PM.png|SynMap analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis). Results may be regenerated at http://genomevolution.org/r/2k70 File:Screen shot 2011-02-18 at 1.27.34 PM.png|SynMap analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis) using SynMap's Syntenic Path Assembly to order contigs. Results may be regenerated at: http://genomevolution.org/r/2k71

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