Genomic Rearrangement Analysis: Difference between revisions

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[[Image:Screen shot 2011-03-11 at 7.58.21 AM.png|Configuring a SynMap analysis to use [[Quota align]] with a syntenic depth of 1:1.]]
[[Image:Screen shot 2011-03-11 at 7.58.21 AM.png|frame|Configuring a SynMap analysis to use [[Quota align]] with a syntenic depth of 1:1.]]


[[Image:Screen shot 2011-03-11 at 7.58.04 AM.png|thumb|800px|left|Syntentic dotplot between two species of Escherichia. X-axis: coli B strain REL606; Y-axis: fergusonii strain ATCC 35469. [[Syntenic dotplot]] has boxes drawn around syntenic regions and there is a link to GRIMM for rearrangement analysis. The link to GRIMM will only show if the [[quota align]] algorithm has been set and set to a 1:1 ratio.  Results may be regenerated at http://genomevolution.org/r/2nd7]]
[[Image:Screen shot 2011-03-11 at 7.58.04 AM.png|frame|Syntentic dotplot between two species of Escherichia. X-axis: coli B strain REL606; Y-axis: fergusonii strain ATCC 35469. [[Syntenic dotplot]] has boxes drawn around syntenic regions and there is a link to GRIMM for rearrangement analysis. The link to GRIMM will only show if the [[quota align]] algorithm has been set and set to a 1:1 ratio.  Results may be regenerated at http://genomevolution.org/r/2nd7]]

Revision as of 13:53, 11 March 2011

Configuring a SynMap analysis to use Quota align with a syntenic depth of 1:1.
Syntentic dotplot between two species of Escherichia. X-axis: coli B strain REL606; Y-axis: fergusonii strain ATCC 35469. Syntenic dotplot has boxes drawn around syntenic regions and there is a link to GRIMM for rearrangement analysis. The link to GRIMM will only show if the quota align algorithm has been set and set to a 1:1 ratio. Results may be regenerated at http://genomevolution.org/r/2nd7
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