Genomic Rearrangement Analysis: Difference between revisions
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[[Image:Screen shot 2011-03-11 at 7.58.21 AM.png|frame|Configuring a SynMap analysis to use [[Quota align]] with a syntenic depth of 1:1.]] | [[Image:Screen shot 2011-03-11 at 7.58.21 AM.png|frame|left|Configuring a [[SynMap]] analysis to use [[Quota align]] with a syntenic depth of 1:1.]] | ||
[[Image:Screen shot 2011-03-11 at 7.58.04 AM.png|frame|Syntentic dotplot between two species of Escherichia. X-axis: coli B strain REL606; Y-axis: fergusonii strain ATCC 35469. [[Syntenic dotplot]] has boxes drawn around syntenic regions and there is a link to GRIMM for rearrangement analysis. The link to GRIMM will only show if the [[quota align]] algorithm has been set and set to a 1:1 ratio. Results may be regenerated at http://genomevolution.org/r/2nd7]] | [[Image:Screen shot 2011-03-11 at 7.58.04 AM.png|frame|left|Syntentic dotplot between two species of Escherichia. X-axis: coli B strain REL606; Y-axis: fergusonii strain ATCC 35469. [[Syntenic dotplot]] has boxes drawn around syntenic regions and there is a link to GRIMM for rearrangement analysis. The link to GRIMM will only show if the [[quota align]] algorithm has been set and set to a 1:1 ratio. Results may be regenerated at http://genomevolution.org/r/2nd7]] | ||
[[Image:Screen shot 2011-03-11 at 8.17.49 AM.png|frame|left|Screen-shot from [http://grimm.ucsd.edu/GRIMM/ GRIMM server] with submission boxes auto-populated when linked to from [[SynMap]]]] | |||
[[Image:Screen shot 2011-03-11 at 8.18.15 AM.png|frame|left|Screen-shot from [http://grimm.ucsd.edu/GRIMM/ GRIMM server] after performing a rearrangement analysis on two Escherichia genomes.]] | |||
Revision as of 13:57, 11 March 2011
