Extra Annotations: Difference between revisions
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Most genomes within CoGe are annotated only with publicly available gene models however the Freeling Lab has also decorated a number of genomes with additional information. For reference the specific versions with extra annotation information are listed here. | Most genomes within CoGe are annotated only with publicly available gene models however the Freeling Lab has also decorated a number of genomes with additional information. For reference the specific versions with extra annotation information are listed here. | ||
== Conserved Noncoding Sequence Data == | == Conserved Noncoding Sequence Data == | ||
{| width="650" border="1" cellpadding="1" cellspacing="1" | {| width="650" border="1" cellpadding="1" cellspacing="1" | ||
|- | |- | ||
| Species | | Species | ||
| Data set group ID | | Data set group ID | ||
| Data set ID | | Data set ID | ||
| Comparison | | Comparison | ||
| Method | | Method | ||
| Full Name | | Full Name | ||
|- | |- | ||
| Arabidopsis | | Arabidopsis | ||
| 3 | | 3 | ||
| 39598 | | 39598 | ||
| Arabidopsis (homeologs) | | Arabidopsis (homeologs) | ||
| Manual Annotations and the CNS Discovery Pipeline | | Manual Annotations and the CNS Discovery Pipeline | ||
| Arabidopsis thaliana Col-0 (thale cress) (with CNS) masked repeats 50 | | Arabidopsis thaliana Col-0 (thale cress) (with CNS) masked repeats 50 | ||
|- | |- | ||
| Peach | | Peach | ||
| 8400 | | 8400 | ||
| 42478 | | 42478 | ||
| Chocolate (orthologs) | | Chocolate (orthologs) | ||
| CNS Discovery Pipeline | | CNS Discovery Pipeline | ||
| Prunus persica (peach) (with CNS) unmasked | | Prunus persica (peach) (with CNS) unmasked | ||
|- | |- | ||
| Chocolate | | Chocolate | ||
| 10997 | | 10997 | ||
| 46486 | | 46486 | ||
| Peach (orthologs) | | Peach (orthologs) | ||
| CNS Discovery Pipeline | | CNS Discovery Pipeline | ||
| Theobroma cacao (chocolate) Belizian Criollo genotype (B97-61/B2) (with CNS) | | Theobroma cacao (chocolate) Belizian Criollo genotype (B97-61/B2) (with CNS) | ||
|- | |- | ||
| Rice | | Rice | ||
| 11822 | | 11822 | ||
| 47668 | | 47668 | ||
| Sorghum (orthologs) | | Sorghum (orthologs) | ||
| CNS Discovery Pipeline | | CNS Discovery Pipeline | ||
| Oryza sativa japonica (Rice) (with CNS) masked repeats 50x | | Oryza sativa japonica (Rice) (with CNS) masked repeats 50x | ||
|- | |- | ||
| Sorghum | | Sorghum | ||
| 11821 | | 11821 | ||
| 47667 | | 47667 | ||
| Rice (orthologs) | | Rice (orthologs) | ||
| CNS Discovery Pipeline | | CNS Discovery Pipeline | ||
| Sorghum bicolor (with CNS) masked repeats 50x | | Sorghum bicolor (with CNS) masked repeats 50x | ||
|} | |} | ||
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Revision as of 23:39, 14 December 2011
Most genomes within CoGe are annotated only with publicly available gene models however the Freeling Lab has also decorated a number of genomes with additional information. For reference the specific versions with extra annotation information are listed here.
Conserved Noncoding Sequence Data
| Species | Data set group ID | Data set ID | Comparison | Method | Full Name |
| Arabidopsis | 3 | 39598 | Arabidopsis (homeologs) | Manual Annotations and the CNS Discovery Pipeline | Arabidopsis thaliana Col-0 (thale cress) (with CNS) masked repeats 50 |
| Peach | 8400 | 42478 | Chocolate (orthologs) | CNS Discovery Pipeline | Prunus persica (peach) (with CNS) unmasked |
| Chocolate | 10997 | 46486 | Peach (orthologs) | CNS Discovery Pipeline | Theobroma cacao (chocolate) Belizian Criollo genotype (B97-61/B2) (with CNS) |
| Rice | 11822 | 47668 | Sorghum (orthologs) | CNS Discovery Pipeline | Oryza sativa japonica (Rice) (with CNS) masked repeats 50x |
| Sorghum | 11821 | 47667 | Rice (orthologs) | CNS Discovery Pipeline | Sorghum bicolor (with CNS) masked repeats 50x |