SynFind Syntenic Depth Examples: Difference between revisions

Revision as of 00:30, 30 March 2012

Syntenic Dopltot	Syntenic Depth Calculation	Known History
		1:1 syntenic depth
		Obvious 1:1 orthologous regions. Also has a "haze" of secondary synteny is due to the most recent vertebrate whole genome duplication even (1R). There is an older whole genome duplication too (2R).
		Obious 2:2 depth. Share a recent whole genome duplication. Also share older whole genome duplictions (at least one)
		1:1 orthologous regions. Secondary syntenic "haze" form 1R.

@@ Line 7: / Line 7: @@
 | [[Image:Screen shot 2012-03-27 at 5.39.50 PM.png|400px]]
 | [[Image:Screen shot 2012-03-27 at 5.40.52 PM.png|300px]]
-| 1:1
+| 1:1 syntenic depth
 |-
 | [[Image:Screen shot 2012-03-27 at 5.32.45 PM.png|400px]]
 | [[Image:Screen shot 2012-03-27 at 5.29.54 PM.png|300px]]
-|
+| Obvious 1:1 orthologous regions. &nbsp;Also has a "haze" of secondary synteny is due to the most recent vertebrate whole genome duplication even (1R). &nbsp;There is an older whole genome duplication too (2R).
 |-
 | [[Image:Screen shot 2012-03-27 at 2.53.56 PM.png|400px]]
 | [[Image:Screen shot 2012-03-28 at 8.48.43 AM.png|300px]]
 |
+Obious 2:2 depth.
+Share a recent whole genome duplication. Also share older whole genome duplictions (at least one)
 |-
 | [[Image:Screen shot 2012-03-28 at 8.46.49 AM.png|400px]]
 | [[Image:Screen shot 2012-03-28 at 8.47.57 AM.png|300px]]
-|
+| 1:1 orthologous regions. &nbsp;Secondary syntenic "haze" form 1R.
 |}