Nelumbo v. Amborella: Difference between revisions
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[[File:Screen shot 2012-04-10 at 12.03.32 PM.png|thumb|center|600px|[[Syntenic dotplot]] of Ambroella (x-axis) to Nelumbo (y-axis). Note that each region of Amborella is syntenic to two regions of Nelumbo. Results may be regenerated at: http://genomevolution.org/r/4pcd]] | [[File:Screen shot 2012-04-10 at 12.03.32 PM.png|thumb|center|600px|[[Syntenic dotplot]] of Ambroella (x-axis) to Nelumbo (y-axis). Note that each region of Amborella is syntenic to two regions of Nelumbo. Results may be regenerated at: http://genomevolution.org/r/4pcd]] | ||
Interestingly, SynFind's syntenic depth calculation shows: | |||
Syntenic Depth: | |||
Nelumbo nucifera (sacred lotus) | |||
Depth 1 5222 of 18684 27.95% | |||
Depth 2 11809 of 18684 63.20% | |||
Depth 3 1217 of 18684 6.51% | |||
Depth 4 406 of 18684 2.17% | |||
Depth 5 24 of 18684 0.13% | |||
Depth 6 6 of 18684 0.03% | |||
Shows that there may be a 1:4 amborella to Nelumbo. This would mean that Nelumbo is a double tetraploidy. | |||
Revision as of 21:57, 10 April 2012
Interestingly, SynFind's syntenic depth calculation shows:
Syntenic Depth: Nelumbo nucifera (sacred lotus) Depth 1 5222 of 18684 27.95% Depth 2 11809 of 18684 63.20% Depth 3 1217 of 18684 6.51% Depth 4 406 of 18684 2.17% Depth 5 24 of 18684 0.13% Depth 6 6 of 18684 0.03%
Shows that there may be a 1:4 amborella to Nelumbo. This would mean that Nelumbo is a double tetraploidy.