Nelumbo v. Amborella: Difference between revisions
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Shows that there may be a 1:4 amborella to Nelumbo. This would mean that Nelumbo is a double tetraploidy. Results may be regenerated at: http://genomevolution.org/r/4pd9 | Shows that there may be a 1:4 amborella to Nelumbo. This would mean that Nelumbo is a double tetraploidy. Results may be regenerated at: http://genomevolution.org/r/4pd9 | ||
Ah. These are regions where there is a change in genome structure and the ambroella region is split across two "ancestral" (pre-duplicated) Nelumbo regions. | |||
[[File:Screen shot 2012-04-10 at 3.12.01 PM.png|thumb|center|600px|[[GEvo]] analysis of a 1xAmborella : 4xNelumbo syntenic regions. Note that the Amborella regions is divided between the two pairs of Nelumbo regions. Results may be regenerated at: http://genomevolution.org/r/4pdi]] | |||
Revision as of 22:14, 10 April 2012
Interestingly, SynFind's syntenic depth calculation shows:
Syntenic Depth: Nelumbo nucifera (sacred lotus) Depth 1 5222 of 18684 27.95% Depth 2 11809 of 18684 63.20% Depth 3 1217 of 18684 6.51% Depth 4 406 of 18684 2.17% Depth 5 24 of 18684 0.13% Depth 6 6 of 18684 0.03%
Shows that there may be a 1:4 amborella to Nelumbo. This would mean that Nelumbo is a double tetraploidy. Results may be regenerated at: http://genomevolution.org/r/4pd9
Ah. These are regions where there is a change in genome structure and the ambroella region is split across two "ancestral" (pre-duplicated) Nelumbo regions.
