Difference between revisions of "Documentation"

Revision as of 12:16, 10 August 2009

OrganismView Search and get an overview of an organism and its genomic information
CoGeBlast Blast against any number of organisms using CoGe's Blast interface (supports Blast, and BlastZ).
FeatView Search for genomic features by name or description
SynMap Generate syntenic dotplots of any two genomes
GEvo Compare multiple genomic regions using a variety of sequence comparison algorithms for high-resolution analysis to quickly identify patterns of genome evolution

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 == Web Application Documentation ==
-*[[CoGeBlast]]
+===Main CoGe Entrance Pages===
-*[[GEvo]]
+*[[OrganismView]]  Search and get an overview of an organism and its genomic information
-*[[SynMap]]
+*[[CoGeBlast]]  Blast against any number of organisms using CoGe's Blast interface (supports Blast, and BlastZ).
-*[[OrganismView]]
+*[[FeatView]]  Search for genomic features by name or description
+*[[SynMap]]  Generate syntenic dotplots of any two genomes
+*[[GEvo]] Compare multiple genomic regions using a variety of sequence comparison algorithms for high-resolution analysis to quickly identify patterns of genome evolution
+===Additional CoGe Pages===
+*[[FeatList]] CoGe's tool for managing list of genomic features
+*[[FastaView]] Generate Fasta sequences of multiple genomic features
+*[[SeqView]] Generate a Fasta sequence of a genomic region
+*[[GenomeView]] CoGe's interactive Genome Browser
+*[[CoGeAlign]]  Generate multiple sequence alignments
+*[[GenomeMap]]  Visually map genomic features to their genomic locations
 == Backend Documentation ==