Processing RNA seq data: Difference between revisions
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For detailed instructions on how to use these same tools manually [http://qteller.com/RNAseq-analysis-recipe.pdf see this PDF]. Automated python scripts for batch processing large numbers of datasets are available [https://github.com/jschnable/qTeller/tree/master/rna_process here]. | For detailed instructions on how to use these same tools manually [http://qteller.com/RNAseq-analysis-recipe.pdf see this PDF]. Automated python scripts for batch processing large numbers of datasets are available [https://github.com/jschnable/qTeller/tree/master/rna_process here]. | ||
==Quality Trimming== | |||
==Alignment== | |||
==Format Conversion and Sorting== | |||
==Expression Quantification== | |||
Revision as of 17:59, 12 February 2014
CoGe's RNA-seq processing pipeline is highly automated version of the qTeller RNA-seq processing pipeline.
For detailed instructions on how to use these same tools manually see this PDF. Automated python scripts for batch processing large numbers of datasets are available here.