Difference between revisions of "Processing RNA seq data"
From CoGepedia
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For detailed instructions on how to use these same tools manually [http://qteller.com/RNAseq-analysis-recipe.pdf see this PDF]. Automated python scripts for batch processing large numbers of datasets are available [https://github.com/jschnable/qTeller/tree/master/rna_process here]. | For detailed instructions on how to use these same tools manually [http://qteller.com/RNAseq-analysis-recipe.pdf see this PDF]. Automated python scripts for batch processing large numbers of datasets are available [https://github.com/jschnable/qTeller/tree/master/rna_process here]. | ||
| − | + | ==Quality Trimming== | |
| − | + | ==Alignment== | |
| − | + | ==Format Conversion and Sorting== | |
| − | + | ==Expression Quantification== | |
Revision as of 11:59, 12 February 2014
CoGe's RNA-seq processing pipeline is highly automated version of the qTeller RNA-seq processing pipeline.
For detailed instructions on how to use these same tools manually see this PDF. Automated python scripts for batch processing large numbers of datasets are available here.
