SynMap: Difference between revisions
Jump to navigation
Jump to search
Created page with '==Overview== ==Specifying genomes== ==DAGChainer options== ==SynMap options== ==Calculating and displaying synonymous/non-synonymous (kS, kN) data== ==Interacting with resul...' |
|||
| Line 12: | Line 12: | ||
==Example Results== | ==Example Results== | ||
[[Image:Master_3068_8.CDS-CDS.blastn_geneorder_D20_g10_A5.w2000.ks.png|thumb|right|600px|Syntenic dotplot between ''Arabidopsis thaliana'' and ''Arabidopsis lyrata''. Syntenic gene pairs identified by DAGChainer have been colored based on their synonymous rate change as calculated by CODEML. Results can be regenerated [http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=3068;dsgid2=8;D=20;g=10;A=5;w=0;b=1;ft1=1;ft2=1;dt=geneorder;ks=1;autogo=1 here]. | [[Image:Master_3068_8.CDS-CDS.blastn_geneorder_D20_g10_A5.w2000.ks.png|thumb|right|600px|Syntenic dotplot between ''Arabidopsis thaliana'' and ''Arabidopsis lyrata''. Syntenic gene pairs identified by DAGChainer have been colored based on their synonymous rate change as calculated by CODEML. Results can be regenerated [http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=3068;dsgid2=8;D=20;g=10;A=5;w=0;b=1;ft1=1;ft2=1;dt=geneorder;ks=1;autogo=1 here] ]]. | ||
Revision as of 18:33, 27 August 2009
Overview
Specifying genomes
DAGChainer options
SynMap options
Calculating and displaying synonymous/non-synonymous (kS, kN) data
Interacting with results
Example Results
.