Web Services REST API: Difference between revisions
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CoGe's web services API let's you incorporate CoGe's database of organisms, genomes, and data sets into your web site or pipeline. | CoGe's web services API let's you incorporate CoGe's database of organisms, genomes, and data sets into your web site or pipeline. | ||
Revision as of 22:45, 14 April 2014
CoGe's web services API let's you incorporate CoGe's database of organisms, genomes, and data sets into your web site or pipeline.
Here is our draft API specification document:
http://docs.google.com/document/d/1GXOPIVvyTwoGR2IRjDNmdd2nj_6d8db7jx9hG8RxTDc
Below are some examples queries ...
Organism Search
curl http://genomevolution.org/coge/api/v1/organisms/search/col-0
{
"organisms":
[
{
"id": "1",
"name": "Arabidopsis thaliana Col-0 (thale cress)",
"description": "Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis"
}
]
}
Organism Fetch
curl http://genomevolution.org/coge/api/v1/organisms/1
{
"id": 1,
"name": "Arabidopsis thaliana Col-0 (thale cress)",
"description": "Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis"
“genomes” : [ 16911, ... ]
}
Genome Fetch
curl http://genomevolution.org/coge/api/v1/genomes/16911
{
"id": 16911
"name": "",
"description": "",
"version": "10.02",
"link": "",
"restricted": false,
"sequence_type": {
"name": "unmasked",
"description": "unmasked sequence data"
},
"experiments": [31,32,33, ...],
"metadata": [],
}