Difference between revisions of "Web Services REST API"
From CoGepedia
m |
|||
Line 53: | Line 53: | ||
</pre> | </pre> | ||
− | More to be added soon! | + | '''Experiment Add''' |
+ | <pre> | ||
+ | curl -H "Content-Type: application/json" -X PUT --data @experiment_add.json "http://genomevolution.org/coge/api/v1/experiments?username=xxx&token=yyy" | ||
+ | |||
+ | { | ||
+ | "id": 16911 | ||
+ | "name": "", | ||
+ | "description": "", | ||
+ | "version": "10.02", | ||
+ | "link": "", | ||
+ | "restricted": false, | ||
+ | "sequence_type": { | ||
+ | "name": "unmasked", | ||
+ | "description": "unmasked sequence data" | ||
+ | }, | ||
+ | "experiments": [31,32,33, ...], | ||
+ | "metadata": [], | ||
+ | } | ||
+ | </pre> | ||
+ | |||
+ | More examples to be added soon! |
Revision as of 17:10, 22 May 2014
CoGe's web services API let's you incorporate CoGe's database of organisms, genomes, and data sets into your web site or pipeline.
Here is our draft API specification document:
http://docs.google.com/document/d/1GXOPIVvyTwoGR2IRjDNmdd2nj_6d8db7jx9hG8RxTDc
Below are some examples queries ...
Organism Search
curl http://genomevolution.org/coge/api/v1/organisms/search/col-0 { "organisms": [ { "id": "1", "name": "Arabidopsis thaliana Col-0 (thale cress)", "description": "Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis" } ] }
Organism Fetch
curl http://genomevolution.org/coge/api/v1/organisms/1 { "id": 1, "name": "Arabidopsis thaliana Col-0 (thale cress)", "description": "Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis" “genomes” : [ 16911, ... ] }
Genome Fetch
curl http://genomevolution.org/coge/api/v1/genomes/16911 { "id": 16911 "name": "", "description": "", "version": "10.02", "link": "", "restricted": false, "sequence_type": { "name": "unmasked", "description": "unmasked sequence data" }, "experiments": [31,32,33, ...], "metadata": [], }
Experiment Add
curl -H "Content-Type: application/json" -X PUT --data @experiment_add.json "http://genomevolution.org/coge/api/v1/experiments?username=xxx&token=yyy" { "id": 16911 "name": "", "description": "", "version": "10.02", "link": "", "restricted": false, "sequence_type": { "name": "unmasked", "description": "unmasked sequence data" }, "experiments": [31,32,33, ...], "metadata": [], }
More examples to be added soon!