EPIC-CoGe and iAnimal: Difference between revisions
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| Sus scrofa iPS ChIP-seq | | Sus scrofa iPS ChIP-seq | ||
| scope="col" | ChIP-seq | | scope="col" | ChIP-seq | ||
| scope="col" | Jim Reesy | | scope="col" | Jim Reesy | ||
| scope="col" | Restricted | | scope="col" | Restricted | ||
| scope="col" | Sabarinath Subramaniam, James Koltes | | scope="col" | Sabarinath Subramaniam, James Koltes | ||
| scope="col" | Sus scrofa (pig) (v10.2.75, id24374): unmasked | | scope="col" | Sus scrofa (pig) (v10.2.75, id24374): unmasked | ||
| Line 193: | Line 193: | ||
|- | |- | ||
| Sus scrofa liver RNAseq | | Sus scrofa liver RNAseq | ||
| scope="col" | RNAseq | | scope="col" | RNAseq | ||
| scope="col" | Jim Reesy | | scope="col" | Jim Reesy | ||
| scope="col" | Restricted | | scope="col" | Restricted | ||
| scope="col" | Sabarinath Subramaniam, James Koltes | | scope="col" | Sabarinath Subramaniam, James Koltes | ||
| scope="col" | Sus scrofa (pig) (v10.2.75, id24374): unmasked | | scope="col" | Sus scrofa (pig) (v10.2.75, id24374): unmasked | ||
| Line 202: | Line 202: | ||
! scope="col" | | ! scope="col" | | ||
|- | |- | ||
| Sus scrofa muscle RNAseq sample 1 | | Sus scrofa muscle RNAseq sample 1 | ||
| scope="col" | RNAseq | | scope="col" | RNAseq | ||
| scope="col" | Jim Reesy | | scope="col" | Jim Reesy | ||
| scope="col" | Restricted | | scope="col" | Restricted | ||
| scope="col" | Sabarinath Subramaniam, James Koltes | | scope="col" | Sabarinath Subramaniam, James Koltes | ||
| scope="col" | Sus scrofa (pig) (v10.2.75, id24374): unmasked | | scope="col" | Sus scrofa (pig) (v10.2.75, id24374): unmasked | ||
| scope="col" | Sus scrofa | | scope="col" | Sus scrofa | ||
| scope="col" | https://coge.iplantcollaborative.org/CoGe/ExperimentView.pl?eid=4354 | | scope="col" | https://coge.iplantcollaborative.org/CoGe/ExperimentView.pl?eid=4354 | ||
! scope="col" | | |||
|- | |||
| Sus scrofa muscle RNAseq sample 2 | |||
| scope="col" | RNAseq | |||
| scope="col" | Jim Reesy | |||
| scope="col" | Restricted | |||
| scope="col" | Sabarinath Subramaniam, James Koltes | |||
| scope="col" | Sus scrofa (pig) (v10.2.75, id24374): unmasked | |||
| scope="col" | Sus scrofa | |||
| scope="col" | https://coge.iplantcollaborative.org/CoGe/ExperimentView.pl?eid=4355 | |||
! scope="col" | | ! scope="col" | | ||
|- | |- | ||
| | | iAnimal Bovine Variants (Notebook with 72 experiments) | ||
| scope="col" | | | scope="col" | SNPs | ||
| scope="col" | Jim Reesy | | scope="col" | Jim Reesy | ||
| scope="col" | Restricted | | scope="col" | Restricted | ||
| scope="col" | Sabarinath Subramaniam, James Koltes | | scope="col" | Sabarinath Subramaniam, James Koltes | ||
| scope="col" | | | scope="col" | Bos taurus (cattle) (vUMD3.1, id24423): unmasked | ||
| scope="col" | | | scope="col" | Bos taurus | ||
| scope="col" | https://coge.iplantcollaborative.org/CoGe/ | | scope="col" | https://coge.iplantcollaborative.org/CoGe/NotebookView.pl?nid=845 | ||
! scope="col" | | ! scope="col" | | ||
|} | |} | ||
Revision as of 22:09, 7 November 2014
iAnimal genomes in CoGe
| Organism | Version | Type | Source | Created | Experiments | Groups with access | Users with access | Genome id | Link | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
| Bos taurus (cattle) | UMD3.1 | Unmasked | Ensembl | 2014-08-06 17:18:24 | 82 | None | James Koltes (jekoltes) Sabarinath Subramaniam (shabari) |
24423 | https://coge.iplantcollaborative.org/CoGe/GenomeInfo.pl?gid=24423 | |
| Bos taurus (cattle) |
btau 4.6.1 | unmasked | animalgenome.org | 2014-08-19 14:15:26 | 0 | None | Everyone | 24465 | https://coge.iplantcollaborative.org/CoGe/GenomeInfo.pl?gid=24465 | |
| Gallus gallus (Chicken) |
4.75 | unmasked | Ensembl | 2014-08-01 15:11:11 | 2 | None | James Koltes (jekoltes) Sabarinath Subramaniam (shabari) |
24371 | https://coge.iplantcollaborative.org/CoGe/GenomeInfo.pl?gid=24371 | |
| Sus scrofa (pig) | 10.2.75 |
unmasked | Ensembl | 2014-08-02 08:39:46 | 5 | None | James Koltes (jekoltes) Sabarinath Subramaniam (shabari) |
24374 | https://coge.iplantcollaborative.org/CoGe/GenomeInfo.pl?gid=24374 |
iAnimal experiments in CoGe
| Name of experiment | Type | Source | Groups with access |
Users with access |
Genome | Organism | Link | Notes |
|---|---|---|---|---|---|---|---|---|
|
Bovine Kidney Heart and Pelvic Fat RNAseq |
RNAseq | Jim Reesy | Restricted | Sabarinath Subramaniam, James Koltes | Bos taurus (cattle) (vUMD3.1, id24423): unmasked | Bos taurus | https://coge.iplantcollaborative.org/CoGe/ExperimentView.pl?eid=3032 | |
|
Bovine Kidney Heart and Pelvic Fat miRNAseq |
RNAseq | Jim Reesy | Restricted | Sabarinath Subramaniam, James Koltes | Bos taurus (cattle) (vUMD3.1, id24423): unmasked | Bos taurus | https://coge.iplantcollaborative.org/CoGe/ExperimentView.pl?eid=3027 | |
|
Bovine Liver miRNAseq |
RNAseq | Jim Reesy | Restricted | Sabarinath Subramaniam, James Koltes | Bos taurus (cattle) (vUMD3.1, id24423): unmasked | Bos taurus | https://coge.iplantcollaborative.org/CoGe/ExperimentView.pl?eid=3028 | |
|
Bovine Subcutaneous fat RNAseq |
RNAseq | Jim Reesy | Restricted | Sabarinath Subramaniam, James Koltes | Bos taurus (cattle) (vUMD3.1, id24423): unmasked | Bos taurus | https://coge.iplantcollaborative.org/CoGe/ExperimentView.pl?eid=3025 | |
|
Bovine Subcutaneous fat miRNAseq |
RNAseq | Jim Reesy | Restricted | Sabarinath Subramaniam, James Koltes | Bos taurus (cattle) (vUMD3.1, id24423): unmasked | Bos taurus | https://coge.iplantcollaborative.org/CoGe/ExperimentView.pl?eid=3029 | |
| Bovine skeletal muscle miRNAseq | RNAseq | Jim Reesy | Restricted | Sabarinath Subramaniam, James Koltes | Bos taurus (cattle) (vUMD3.1, id24423): unmasked | Bos taurus | https://coge.iplantcollaborative.org/CoGe/ExperimentView.pl?eid=3020 | |
| Gallus Gallus DNA methylation data | Methylation | Jin Reesy | Restricted | Sabarinath Subramaniam, James Koltes | Gallus gallus (Chicken) (v4.75, id24371): unmasked | Gallus gallus | https://coge.iplantcollaborative.org/CoGe/ExperimentView.pl?eid=3031 | |
| Gallus Gallus skeletal muscle ChIP-seq | ChIP-seq | Jim Reesy | Restricted | Sabarinath Subramaniam, James Koltes | Gallus gallus (Chicken) (v4.75, id24371): unmasked | Gallus gallus | https://coge.iplantcollaborative.org/CoGe/ExperimentView.pl?eid=3030 | |
| Sus scrofa adipose RNAseq | RNAseq | Jim Reesy | Restricted | Sabarinath Subramaniam, James Koltes | Sus scrofa (pig) (v10.2.75, id24374): unmasked | Sus scrofa | https://coge.iplantcollaborative.org/CoGe/ExperimentView.pl?eid=4351 | |
| Sus scrofa iPS ChIP-seq | ChIP-seq | Jim Reesy | Restricted | Sabarinath Subramaniam, James Koltes | Sus scrofa (pig) (v10.2.75, id24374): unmasked | Sus scrofa | https://coge.iplantcollaborative.org/CoGe/ExperimentView.pl?eid=4352 | |
| Sus scrofa liver RNAseq | RNAseq | Jim Reesy | Restricted | Sabarinath Subramaniam, James Koltes | Sus scrofa (pig) (v10.2.75, id24374): unmasked | Sus scrofa | https://coge.iplantcollaborative.org/CoGe/ExperimentView.pl?eid=4353 | |
| Sus scrofa muscle RNAseq sample 1 | RNAseq | Jim Reesy | Restricted | Sabarinath Subramaniam, James Koltes | Sus scrofa (pig) (v10.2.75, id24374): unmasked | Sus scrofa | https://coge.iplantcollaborative.org/CoGe/ExperimentView.pl?eid=4354 | |
| Sus scrofa muscle RNAseq sample 2 | RNAseq | Jim Reesy | Restricted | Sabarinath Subramaniam, James Koltes | Sus scrofa (pig) (v10.2.75, id24374): unmasked | Sus scrofa | https://coge.iplantcollaborative.org/CoGe/ExperimentView.pl?eid=4355 | |
| iAnimal Bovine Variants (Notebook with 72 experiments) | SNPs | Jim Reesy | Restricted | Sabarinath Subramaniam, James Koltes | Bos taurus (cattle) (vUMD3.1, id24423): unmasked | Bos taurus | https://coge.iplantcollaborative.org/CoGe/NotebookView.pl?nid=845 |