Medically Relevant Genomes in CoGe: Difference between revisions
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!|Research Interest Examples | !|Research Interest Examples | ||
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|rowspan=" | |rowspan="20"|Chordata (Vertebrates) | ||
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|rowspan="6"|Mammals | |rowspan="6"|Mammals | ||
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|Vertebrate developmental biology | |Vertebrate developmental biology | ||
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|rowspan=" | |rowspan="9"|Fish | ||
|Zebrafish | |Zebrafish | ||
|[https://genomevolution.org/coge/GenomeInfo.pl?gid=25001 Danio rerio (NCBI)] | |[https://genomevolution.org/coge/GenomeInfo.pl?gid=25001 Danio rerio (NCBI)] | ||
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=poecilia Poecilia species] | |[https://genomevolution.org/coge/OrganismView.pl?org_name=poecilia Poecilia species] | ||
|Clonal model species, cancer research model | |Clonal model species, cancer research model | ||
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|Sheepshead minnow | |||
|[https://genomevolution.org/coge/GenomeInfo.pl?gid= Cyprinodon variegatus v 1.0 (NCBI)] | |||
|[https://genomevolution.org/coge/OrganismView.pl?org_name=cyprinodon Cyprinodon species] | |||
|Environmental toxicology model | |||
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|Rainbow trout | |||
|[https://genomevolution.org/coge/GenomeInfo.pl?gid=25073 Oncorhynchus mykiss v 4.0 (Genoscope)] | |||
|[https://genomevolution.org/coge/OrganismView.pl?org_name=oncorhynchus Oncorhynchus versions] | |||
|Toxicology, liver cancer model | |||
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|rowspan="4"|Ecdysozoa | |rowspan="4"|Ecdysozoa | ||
Revision as of 18:01, 28 July 2015
List of Medical Model Genomes
| Phylum | Class | Species | CoGe Genome Link | Related Genomes Available | Research Interest Examples |
|---|---|---|---|---|---|
| Chordata (Vertebrates) | |||||
| Mammals | Human | Homo sapiens v 38 (NCBI) | Homo subspecies | Disease modeling, ecology, genetic variation | |
| Mouse | Mus musculus C57BL/6J v GRCm28.p3 (NCBI) | Mus subspecies | Disease modeling, gene function | ||
| Rat | Rattus norvegicus v 6.0 (Ensembl) | Rattus species | Disease modeling, gene function | ||
| Rabbit | Oryctolagus cuniculus v 2.0 (Ensembl) | Rabbit versions | Pharmaceutical testing, immune response | ||
| Guinea pig | Cavia porcellus inbred line 2N v 3.0 (Ensembl) | Guinea pig versions | Human disease, human immune response, toxicology | ||
| Pig | Sus scrofa v 10.2 (Ensembl) | Sus scrofa versions | |||
| Birds | Chicken | Gallus gallus v 4.74 (Ensembl) | Gallus versions | Agriculture, developmental biology | |
| Zebra Finch | Taeniopygia guttata v 3.2.4 (BGI/Ensembl) | Taeniopygia versions | Learning, neural biology | ||
| Japanese Quail | Coturnix japonica v 1.0 (NCBI) | Agriculture, developmental biology | |||
| Amphibians & Reptiles | Western Clawed Frog (Xenopus) | Xenopus tropicalis v 4.2.64 (Ensembl) | Xenopus species | Vertebrate developmental biology | |
| Fish | Zebrafish | Danio rerio (NCBI) | Danio versions | Vertebrate developmental biology, transgenics | |
| Medaka | Oryzias latipes v 1.0 (NCBI) | Oryzias versions | Vertebrate developmental biology, transgenics | ||
| Cichlids | Maylandia zebra v 1.1 (NCBI) | Cichlid species | Craniofacial development disorders | ||
| Mexican tetra (cave fish) | Astyanax mexicanus v 1.0.2 (NCBI) | Astyanax versions | Eye development and degeneration | ||
| Turquoise killifish | Nothobranchius furzeri GRZ v 1.0 (NCBI) | Nothobranchius species | Aging model species | ||
| Southern platyfish | Xiphophorus maculatus JP163A v 4.4.2 | Xiphophorus versions | Melanoma, sexual maturity disorder model species | ||
| Amazon molly | Poecilia formosa v 5.1.2 (NCBI) | Poecilia species | Clonal model species, cancer research model | ||
| Sheepshead minnow | Cyprinodon variegatus v 1.0 (NCBI) | Cyprinodon species | Environmental toxicology model | ||
| Rainbow trout | Oncorhynchus mykiss v 4.0 (Genoscope) | Oncorhynchus versions | Toxicology, liver cancer model | ||
| Ecdysozoa | |||||
| Insects | Fruit fly | Fruit fly v 6.0 (NCBI) | Drosophila species | Gene function | |
| Platyhelmenthes | [1] | [2] | Vertebrate developmental biology | ||
| Nematodes | (Ensembl) | [3] | Vertebrate developmental biology |
List of Disease Organism Genomes
List of Human Endosymbionts
Links
Notebook containing all medically relevant genomes in CoGe