FractBias: Difference between revisions
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==Overview== | ==Overview== | ||
[[Whole genome duplication]]s (WGDs) and genome [[fractionation]] are covered more thoroughly in other CoGepedia entries. In short, WGDs | [[Whole genome duplication]]s (WGDs) and genome [[fractionation]] are covered more thoroughly in other CoGepedia entries. In short, WGDs create two or more copies of a genome: which are referred to as subgenomes. The duplicate subgenomes then under gene loss in a process called fractionation which is part of [[diploidization]]. [[fractionation bias]] | ||
FractBias is a tool used to assess fractionation bias between genomes. This is accomplished by: | FractBias is a tool used to assess fractionation bias between genomes. This is accomplished by: | ||
#Selecting two genomes to compare in the [[SynMap]] tool | #Selecting two genomes to compare in the [[SynMap]] tool | ||
# | #The coordinates for syntenic regions between the genomes are parsed and the 'target' and 'query' genomes are identified. The target genome is | ||
==FractBias Methods== | ==FractBias Methods== | ||
FractBias is an option that can be set within the [[SynMap]] tool. | FractBias is an option that can be set within the [[SynMap]] tool. | ||
Revision as of 20:21, 22 September 2015
Overview
Whole genome duplications (WGDs) and genome fractionation are covered more thoroughly in other CoGepedia entries. In short, WGDs create two or more copies of a genome: which are referred to as subgenomes. The duplicate subgenomes then under gene loss in a process called fractionation which is part of diploidization. fractionation bias
FractBias is a tool used to assess fractionation bias between genomes. This is accomplished by:
- Selecting two genomes to compare in the SynMap tool
- The coordinates for syntenic regions between the genomes are parsed and the 'target' and 'query' genomes are identified. The target genome is
FractBias Methods
FractBias is an option that can be set within the SynMap tool.