Amborella v. duckweed: Difference between revisions

From CoGepedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
Line 1: Line 1:
==Syntenic relationship==
==Syntenic relationship==
[[Amborella]] does not have any structural evidence for a whole genome duplication event.  Ass such, it genome structure is representative of the unduplicated genome of all angiosperms.  Duckweed has evidence of at least [[Duckweed v. Duckweed | one whole genome duplication event]].  Comparison to Ambroella provides evidence that this is either two sequential tetraploidy events or a single hexaploidy event.
[[Amborella]] does not have any structural evidence for a whole genome duplication event.  As such, it genome structure is representative of the unduplicated genome of all angiosperms.  Duckweed has evidence of at least [[Duckweed v. Duckweed | one whole genome duplication event]].  Comparison to Ambroella provides evidence that this is either two sequential tetraploidy events or a single hexaploidy event.


[[File:Screen Shot 2012-03-21 at 6.35.17 PM.png|thumb|center|800px|Ambroella (x-axis) v. Duckweed (y-axis) with synonymous mutation rates colored for syntenic gene pairs. Results may be regenerated: http://genomevolution.org/r/4mtp]]
[[File:Screen Shot 2012-03-21 at 6.35.17 PM.png|thumb|center|800px|Ambroella (x-axis) v. Duckweed (y-axis) with synonymous mutation rates colored for syntenic gene pairs. Results may be regenerated: http://genomevolution.org/r/4mtp]]

Latest revision as of 20:42, 22 September 2015

Syntenic relationship

Amborella does not have any structural evidence for a whole genome duplication event. As such, it genome structure is representative of the unduplicated genome of all angiosperms. Duckweed has evidence of at least one whole genome duplication event. Comparison to Ambroella provides evidence that this is either two sequential tetraploidy events or a single hexaploidy event.

Ambroella (x-axis) v. Duckweed (y-axis) with synonymous mutation rates colored for syntenic gene pairs. Results may be regenerated: http://genomevolution.org/r/4mtp


Ambroella (x-axis) v. Duckweed (y-axis). Results may be regenerated at: http://genomevolution.org/r/4mtm
Aborella v. 3x duckweed. Results may be regenerated at http://genomevolution.org/r/4muo
Aborella v. 3x duckweed. Results may be regenerated at: http://genomevolution.org/r/4mus
Aborella v 4x duckweed. Results may be regenerated at http://genomevolution.org/r/4mu6. Note: found with density algorithm in SynFind.