EPIC-CoGe Videos: Difference between revisions
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*Individually mapped reads | *Individually mapped reads | ||
*All visualized in the EPIC-CoGe Browser (Based on JBrowse) | *All visualized in the EPIC-CoGe Browser (Based on JBrowse) | ||
<youtube>JPZ8IrPnh_8</youtube> | <youtube>JPZ8IrPnh_8</youtube> | ||
==How to search for features in EPIC-CoGe== | ==How to search for features in EPIC-CoGe== | ||
Latest revision as of 18:08, 15 September 2016
EPIC-CoGe used for visualization of quantitative genomic data (epigenomic and RNASeq)
EPIC-CoGe used for SNP visualization
How to RNA-Seq in CoGe in three minutes
This short video shows how to load, process, and visualize RNA-Seq data in CoGe:
- RNA-Seq Pipeline: Expression Analysis Pipeline
- Quantitation of reads per position along a genome
- Quantitation of FPKM for genomes with structural gene annotations
- Individually mapped reads
- All visualized in the EPIC-CoGe Browser (Based on JBrowse)
How to search for features in EPIC-CoGe
This short video shows how to use the new Search button to find genomic features by name and navigate to them in the EPIC-CoGe Browser (Based on JBrowse)
How to search quantitative tracks in EPIC-CoGe
This short video shows how to search quantitative data tracks for max, min or a range of values in the EPIC-CoGe Browser (Based on JBrowse)
How to search SNP tracks in EPIC-CoGe
This short video shows how to search SNP tracks for SNPs that overlap particular types of features or for particular types of SNPs in the EPIC-CoGe Browser (Based on JBrowse)
How to download data in EPIC-CoGe
This short video shows how to download track data, transformed track data, and search results in the EPIC-CoGe Browser (Based on JBrowse)