Cacao syntenic dotplots

Syntenic dotplot using SynMap of Cacao (y-axis) versus Peach (x-axis). Results can be regenerated at http://genomevolution.org/r/2h98

Syntenic dotplot using SynMap of Cacao (y-axis) versus Peach (x-axis). Green are syntenic matches, gray is any match. Results can be regenerated at http://genomevolution.org/r/2h9j

Syntenic dotplot between Cacao and Peach genomes

The syntenic dotplot shows a strong 1:1 mapping of syntenic regions, and weaker 3:3 mappings of syntenic regions. This is due to the shared paleohexaploidy event at the base of the eudicots and the lack of subsequent whole genome duplications events in either lineage.