MaizeGDB and CoGe
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Revision as of 13:44, 8 February 2010 by Elyons (Talk | contribs) (Created page with '==Overview== [http://maizegdb.org MaizeGDB is linked to CoGe's through its genome browser]. A link to CoGe will be shown at the top of the browser when viewing a genomic region ...')
Overview
MaizeGDB is linked to CoGe's through its genome browser. A link to CoGe will be shown at the top of the browser when viewing a genomic region from the maize genome assembly (i.e. pseudomolecules). This link will take you to the same region in CoGe's GenomeView. GenomeView will automatically find maize genes with annotations that link to GEvo for syntenic gene sets with sorghum, and show those genes with special glyphs. When you view the annotations for these glyphs (by clicking on them), there will be a link to GEvo. When clicked on, these GEvo links will launch GEvo with the syntenic maize-sorghum regions pre-loaded and automatically start a GEvo analysis using blastz.
