Contact Page

Current and past people involved with the CoGe Project.

CoGe Team in the Freeling Lab, Dept. of Plant and Microbial Biology, UC Berkeley

Eric Lyons

• CoGe's Project Manager
• Senior Scientific Developer
• iPlant Collaborative
• Bio5 Institute at the University of Arizona, Tucson
  • For CoGe related inquires: elyons.coge (@) gmail.com

Shabari Subramaniam

• Graduate Student
• Department of Plant and Microbial Biology
• University of California, Berkeley

User:Jschnable James Schnable

• Graduate Student
• Department of Plant and Microbial Biology
• University of California, Berkeley
  • jschnable (@) berkeley.edu

CoGe Development Testers

Michael Freeling

• Professor, PI of the CoGe Project
• Department of Plant and Microbial Biology
• University of California, Berkeley
• freeling (@) berkeley.edu

Damon Lisch

• Principal Investigator
• Department of Plant and Microbial Biology
• University of California, Berkeley
• dlisch (@) berkeley.edu

How to cite CoGe?

Eric Lyons, Michael Freeling (2008) How to usefully compare homologous plant genes and chromosomes as DNA sequences The Plant Journal 53 (4) , 661-673

Lyons E, Pedersen B, Kane J, Freeling M (2008) The value of nonmodel genomes and an example using SynMap within CoGe to dissect the hexaploidy that predates rosids. Tropical Plant Biol 1 (3-4) , 181-190

Who do I contact with comments, suggestions, bug reports, general questions, etc?

Eric Lyons: elyons.coge (@) gmail.com

Former Team Members

Haibao Tang

• Developer of Quota Align algorithm in SynMap
• Developer of the synteny finding algorithm used in SynFind
• Much code work behind the scenes to get algorithms working quickly

Brent Pedersen

• Developer of Gobe (visualization system used GEvo
• Developer of OpenGenes (navigation system used in visualization system for GenomeView)
• Much code work behind the scenes to get algorithms working quickly

Joshua Kane

• Graduate Student
• Tetrad Department
• University of California, San Francisco