Evidence for pre-angiosperm WGD

From CoGepedia
Revision as of 23:07, 9 May 2012 by Elyons (talk | contribs)
Jump to navigation Jump to search

Region1

Ambo-grape-ambo (http://genomevolution.org/r/4s1n). One ambo region (top) has a weak syntenic signal to grape which consists of 3 collinear genes. However, there is a density of putative homologous gene pairs which may infer synteny.
Ambo-grape-ambo (http://genomevolution.org/r/4s1o). Expanded view of the above region. This gives a feeling for general "noise" from non-syntenic gene-pair matches. The three collinear genes definitely have the "feeling" of being real.

Region2

[[File:Screen shot 2012-05-09 at 4.05.39 PM.png|center|800px|thumb|Ambo-grape-ambo (http://genomevolution.org/r/4s1u). Interesting. . . while genes are definitely not in order in Ambo, coverage/fractionation to grape is enticing.