UGTs through the genus Brassica

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Introduction

The genus Brassica

The Brassica genome has undergone more polyploidy than Arabidopsis thaliana. Arabidopsis thaliana is notable for being a model organism because of its complexity paired with a relatively small genome. (I think.)

Duplication Events

The Brassica genome has undergone two tetraploidy and two hexaploidy events, one more than Arabidopsis, since the eudicot paleohexaploidy event which gave rise to Vitis, Prunus, Arabidopsis, and Brassica.

Triangle of U

The "Triangle of U" describes the genetic relationship between six species of Brassica: Brassica rapa, Brassica nigra, Brassica oleracea, Brassica juncea, Brassica carinata, and Brassica napus. B. juncea, B. carinata and B. napus are allotetraploids, hybrids with four times the chromosome set of haploids.

UGT Gene Family

UGT functions

Uridine diphosphate (UDP) glycosyltransferases (UGTs) mediate transfer of glycosyl residues from activated nucleotide sugars to acceptor molecules (Tang Unleashing the Genome of the Brassica rapa).

UGT chemistry

By mediating transfer of glycosyl residues from activated nucleotide sugars to acceptor molecules, UGTs regulate properties of those acceptors such as bioactivity, solubility and transport within cells and throughout organisms (Ross Higher plant glycosyltransferases).

Methods

Building a Phylogeny of Genes in the UGTs in Arabidopsis thaliana

Finding related UGT genes in Arabidopsis lyrata

Finding related UGT genes in Brassica rapa