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Combined display of all available logs of CoGepedia. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).
- 18:05, 11 August 2009 Elyons talk contribs uploaded File:GenomeView-masked.png (GenomeView showing masked genomic regions as purple from the genome of Zea Mays.)
- 18:01, 11 August 2009 Elyons talk contribs uploaded File:GenomeView-Unsequenced.png (GenomeView with show unsequenced genomic regions as orange from the genome of Carica papaya.)
- 17:55, 11 August 2009 Elyons talk contribs uploaded File:GenomeView-wobbleGC3.png (GenomeView with CDS wobble GC content colored yellow for ~50% GC content in codon wobble positions. Chlamydomonas reinhardtii mitochondria genome. )
- 17:55, 11 August 2009 Elyons talk contribs uploaded File:GenomeView-wobbleGC2.png (GenomeView with CDS wobble GC content colored red for low GC content in codon wobble positions. Chlamydomonas reinhardtii chloroplast genome. )
- 17:54, 11 August 2009 Elyons talk contribs uploaded File:GenomeView-wobbleGC1.png (GenomeView with CDS wobble GC content colored green for high GC content in codon wobble positions. Chlamydomonas reinhardtii genome.)
- 17:46, 11 August 2009 Elyons talk contribs uploaded File:GenomeView-pseudogene-2.png (GenomeView showing many neighboring pseudogenes (orange-red) in the genome of Sulfolobus islandicus strain L.S.2.15. )
- 17:45, 11 August 2009 Elyons talk contribs uploaded File:GenomeView-pseudogene.png (GenomeView pseudo gene (orange-red) in the genome of Sulfolobus islandicus strain L.S.2.15. )
- 17:45, 11 August 2009 Elyons talk contribs uploaded File:GenomeView-rRNA.png (GenomeView showing 23S and 16S rRNA genes in the genome of Sulfolobus islandicus strain L.S.2.15. Note the difference in GC conetent of rRNA genes as determined by background color being greener than surround regions.)
- 17:36, 11 August 2009 Elyons talk contribs uploaded File:GenomeView-CDS.png (GenomeView showing background GC, gene, mRNA, and CDS models. From Arabidopsis genome.)
- 17:36, 11 August 2009 Elyons talk contribs uploaded File:GenomeView-mRNA.png (GenomeView showing background GC, gene, and mRNA models. From Arabidopsis genome.)
- 17:34, 11 August 2009 Elyons talk contribs uploaded File:GenomeView-gene.png (GenomeView showing background GC and gene models. From Arabidopsis genome.)
- 17:32, 11 August 2009 Elyons talk contribs uploaded File:GenomeView-background.png (GenomeView showing AT/GC content)
- 19:01, 10 August 2009 Elyons talk contribs uploaded File:GEvo-local-dup-show-overlap.png (GEvo results with "auto adjust" HSP and Genomic Features turned on. This causes GEvo to find genomic features and blast-hits that overlap at the same position, and drawn them such that they are separated in order to identify local duplications in a genom)
- 18:46, 10 August 2009 Elyons talk contribs uploaded File:GEvo-local-dup-no-show-overlap.png (Example of GEvo result with local duplications that are obfuscated by not showing separating overlapping HSPs. Comparison is between orthologous regions of Arabidopsis thaliana and Arabidopsis lyrata. (A) No wedges drawn connecting regions of sequence s)
- 18:33, 10 August 2009 Elyons talk contribs uploaded File:GEvo-show-overlapping.png (GEvo's options for showing overlapping genomic features and HSPs.)
- 18:07, 10 August 2009 Elyons talk contribs deleted page CoGeBlast Documentation (mergin this page with CoGeBlast page. No reason for separate pages)
- 20:01, 7 August 2009 Elyons talk contribs uploaded File:GEvo-with-labels.png (Example GEvo result with contigs, hsp labels, and genomic feature labels drawn.)
- 20:00, 7 August 2009 Elyons talk contribs uploaded File:GEvo-contigs-and-labels.png (Shows where the options are for drawing labels and contigs for GEvo results.)
- 00:32, 7 August 2009 Elyons talk contribs uploaded File:GeLo-example.png (Example of GeLo's graphics with different genomic "stuff" labeled.)
- 00:22, 7 August 2009 Elyons talk contribs uploaded File:Diploidization-cartoon.png (Cartoon of the process of diploidization following a whole genome duplication event. While the overall gene content is reduced to one that is similar to the pre-duplicated ancestory, the overall architecture of the genome will be vastly different due to )
- 00:17, 7 August 2009 Elyons talk contribs uploaded File:Fractionation-cartoon.png (Cartoon of fractionation following a genome duplication event. Colored circle represent genes along a genomic region. Following a genome duplication, all genomic content including chromosomes and their underlying gene content is contemporaneously copied)
- 23:30, 4 August 2009 Elyons talk contribs uploaded File:At-Cp-Retention.png
- 23:21, 4 August 2009 Elyons talk contribs uploaded File:At-Cp-Fractionation.png (Example GEvo analysis of fraction of gene content between 4 syntenic regions of Arabidopsis thaliana and one syntenic region of Carica papaya. Since their divergence, Arabidopsis thaliana has had two whole genome duplication events while papaya has had n)
- 18:08, 4 August 2009 Elyons talk contribs uploaded File:GEvo-links.png (Screen-shot of the results of a GEvo analysis with links for regenerating and saving the analysis labeled.)
- 21:22, 14 July 2009 Elyons talk contribs uploaded File:Crab spider.jpg (Yellow Crab spider )
- 21:20, 14 July 2009 Elyons talk contribs uploaded File:100px-Nsf1.jpg (NSF logo)
- 05:30, 13 May 2009 Elyons talk contribs uploaded File:Master 3068 8.CDS-CDS.blastn geneorder D20 g10 A5.w2000.ks.hist.png (Histogram of Ks values for the image master_3068_8.CDS-CDS.blastn_geneorder_D20_g10_A5.w2000.ks.png)
- 05:06, 13 May 2009 Elyons talk contribs uploaded File:Master 3068 8.CDS-CDS.blastn geneorder D20 g10 A5.w2000.ks.png (Syntenic dotplot between Arabidopsis thaliana and Arabidopsis lyrata. Regions of synteny were identified by DAGchainer. Syntelogs are colored based on their relative synonymous mutation rate as determined by CODEML. )
- 04:47, 13 May 2009 Elyons talk contribs uploaded File:Grape-tomato-synteny.png (250kb region of tomato aligned with a 500kb region of grape. Regenerated at http://tinyurl.com/qjpcvv)
