Main public logs

Combined display of all available logs of CoGepedia. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

• 17:19, 19 February 2010 Elyons talk contribs uploaded File:Baculovirus genome analysis using CoGe.001.png
• 17:24, 18 February 2010 Elyons talk contribs uploaded File:Yersinia pseudotuberculosis-inversion-GEvo.png (Analysis of an inversion breakpoint detected in two strains of Yersinia pseudotuberculosis occurring at ribosomal gene cassette sequences. http://tinyurl.com/yj38xw6)
• 21:15, 12 February 2010 Elyons talk contribs uploaded File:GEvo-4way-coli-insertion.png (Comparison of self-self and to other in a merged 4-way GEvo analysis. http://tinyurl.com/y9pgzvl)
• 21:10, 12 February 2010 Elyons talk contribs uploaded File:GEvo-merge.002.png (Using the merge analysis option in GEvo to combine analysis or add a replicate)
• 21:04, 12 February 2010 Elyons talk contribs uploaded File:GEvo-4way-coli-setup.png (Setting up a 4way comparison in GEvo by adding sequences.)
• 20:33, 12 February 2010 Elyons talk contribs uploaded File:GEvo-ecoli-insertion-direct-repeats.png (Visualizing direct repeats around a putative insertion in the genome of Escherichia coli. http://tinyurl.com/yemhyzg)
• 20:29, 12 February 2010 Elyons talk contribs uploaded File:GEvo zooming in on region.png (Zooming in on a region in E. coli genomes containing an insertion. http://tinyurl.com/ybokuag )
• 20:21, 12 February 2010 Elyons talk contribs uploaded a new version of File:Gene annotation1.png (http://tinyurl.com/ybokuag)
• 20:18, 12 February 2010 Elyons talk contribs uploaded a new version of File:GEvo.png
• 19:05, 12 February 2010 Elyons talk contribs uploaded File:Ecoli insertion with flagellar genes.png (Putatiave insertion in a genome of E. coli containing many flagellar genes. http://tinyurl.com/yk9kt7e)
• 03:12, 12 February 2010 Elyons talk contribs uploaded File:Sequence match orientation.png (Showing the difference between (++) and (+-) sequence match orientation)
• 01:55, 9 February 2010 Elyons talk contribs deleted page Analyzing differences between Escherichia coli strain K12 DH10B and strain B REL606 using SynMap and GEvo analysis (content before blanking was: '=Analyzing differences between Escherichia coli strain K12 DH10B and strain B REL606 using SynMap and GEvo analysis= In this exercise you will compare the genomes of two Escherichia coli strains, K12 DH10B and B REL606 u...')
• 20:32, 8 February 2010 Elyons talk contribs uploaded File:OrganismView-dialog-boxes.png (OrganismView showing dialog boxes for information about E. coli's genome. http://synteny.cnr.berkeley.edu/CoGe/OrganismView.pl?oid=24289)
• 20:13, 8 February 2010 Elyons talk contribs uploaded File:GEvo-maize-sorghum.png (GEvo results from a maize-sorghum comparison. http://tinyurl.com/yhgnu8a)
• 20:10, 8 February 2010 Elyons talk contribs uploaded File:GEvo-running-maize-sorghum.png (GEvo running a maize-sorghum syntenic analysis automatically. Genomic regions (400kb) have been preloaded in the sequence submission boxes. http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?fid1=19512552;mask1=non-cds;fid2=55916949;mask2=non-cds;rev2=1;num_s)
• 20:05, 8 February 2010 Elyons talk contribs uploaded File:GenomeView-annotation-with-gevo-link.png (GenomeView with annotation dialog box shown for a GEvo link glyph. http://synteny.cnr.berkeley.edu/wiki/index.php/Special:Upload)
• 20:00, 8 February 2010 Elyons talk contribs uploaded File:GenomeView-GEvo link Glyphs.png (Screen-shot of GenomeView showing GEvo link glyphs. http://synteny.cnr.berkeley.edu/CoGe/GenomeView.pl?z=5&x=1100000&dsgid=8054&chr=1&sl=1)
• 19:55, 8 February 2010 Elyons talk contribs uploaded File:MaizeGDB-CoGe-link.png (Screenshot of MaizeGDB with link to CoGe. http://gbrowse.maizegdb.org/cgi-bin/gbrowse/maize/?name=chr1:1000000..1200000)
• 20:12, 5 February 2010 Elyons talk contribs uploaded File:GenomeView-Other-Feature-Phage.png (GenomeView showing "other features" as orange boxes. This other features is a prophage that has integrated in the genome of Escherichia coli K12 strain K-12 substrain MG1655.)
• 20:08, 5 February 2010 Elyons talk contribs uploaded File:GenomeView-Repeat-regions.png (GenomeView showing repeat regions as black and blue boxes around a sequence and gene. There are two IS elements highlighted by these boxes that have each jumped into a gene and disrupted it.)
• 20:01, 5 February 2010 Elyons talk contribs uploaded File:GenomeView GEvo-links.png (GenomeView showing glyphs for links to GEvo. These are displayed when a genomic feature has a link to GEvo for syntenic analysis of syntelogs.)
• 19:14, 5 February 2010 Elyons talk contribs uploaded File:GeLo-nucleotides.png (Example of GeLo graphics using images of nucleotides in the background of the chromosome.)
• 02:30, 1 February 2010 Elyons talk contribs uploaded File:Maize-sorghum-cns.png (GEvo analysis using blastn of a genomic region from sorghum to its two maize syntenic orthologous regions in order to identify CNSs (conserved non-coding sequences). http://tinyurl.com/yek8pdw )
• 00:56, 1 February 2010 Elyons talk contribs uploaded File:Maize-sorghum-fractionation.png (GEvo analysis of sorghum to its two orthologous syntenic regions from maize. http://tinyurl.com/ydbbyeu)
• 08:33, 22 January 2010 Elyons talk contribs uploaded File:1923 1922.CDS-CDS.blastn.dag geneorder D20 g10 A5.1-1.w800.png (Syntenic dotplot by SynMap of two strains of Yersinia pestis. Strain Nepal516 (x-axis); strain Pestoides F. http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=1922;dsgid2=1923;D=20;g=10;A=5;w=0;b=1;ft1=1;ft2=1;dt=geneorder)
• 08:08, 22 January 2010 Elyons talk contribs uploaded File:1911 1906.CDS-CDS.blastn.dag geneorder D20 g10 A5.1-1.w800.png (Syntenic dotplot by SynMap of two strains of Yersinia pseudotuberculosis strain. Strain IP 31758 (x-axis); strain YPIII (y-axis). http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=1911;dsgid2=1906;D=20;g=10;A=5;w=0;b=1;ft1=1;ft2=1;dt=geneorder)
• 06:30, 22 January 2010 Elyons talk contribs uploaded File:3440 3441.CDS-CDS.blastn.dag geneorder D20 g10 A5.1-1.w800.png (Syntenic dotplot by SynMap of Acidovorax species avenae subsp. citrulli strain AAC00-1 (x-axis) and subspecies JS42 (y-axis). http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=3441;dsgid2=3440;D=20;g=10;A=5;w=0;b=1;ft1=1;ft2=1;dt=geneorder)
• 05:40, 22 January 2010 Elyons talk contribs uploaded File:Shewanella baltica insertions.png (GEvo analysis of syntenic regions between two strains of Shewanella baltica showing a variety of insertions. http://tinyurl.com/yc65jyz)
• 04:29, 22 January 2010 Elyons talk contribs uploaded File:GEvo Shewanella baltica inversion.png (GEvo analysis at inversion breakpoints in stains of Shewanella baltica. Inversion is likely to have happened in strain OS155 because it has repeated sequences at the inversion breakpoint. http://tinyurl.com/yhf3gfr)
• 04:06, 22 January 2010 Elyons talk contribs uploaded File:Master 2361 2360.CDS-CDS.blastn geneorder D20 g10 A5.w500.png (Syntenic dotplot by SynMap between strains of Shewanella baltica. http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=2361;dsgid2=2360;D=20;g=10;A=5;w=0;b=1;ft1=1;ft2=1;dt=geneorder)
• 23:45, 16 January 2010 Elyons talk contribs uploaded File:OrganismView arabid search.png (OrganismView after searching for "arabid")
• 17:52, 4 January 2010 Elyons talk contribs uploaded File:Arabidopsis tRNA array.png (Large tandem duplicate gene array of tRNAs from chromosome 1 of Arabidopsis thaliana. This array consists of 27 repeating units of tRNAs, with each unit consisting of three tRNAs that code for a Serine, Tryosine, Tryosine (5'->3'). http://tinyurl.com/yeh)
• 20:36, 2 January 2010 Elyons talk contribs uploaded File:FastaView from FeatList.png (FastaView showing DNA sequences for CDSs exported from FeatList)
• 19:47, 2 January 2010 Elyons talk contribs uploaded File:FeatList GenomeView generated.png (FeatList populated by a link from GenomeView to extract genomic features.)
• 19:02, 2 January 2010 Elyons talk contribs uploaded File:Mouse mitochondrial codon usage table.png (mitochondrion Mus musculus domesticus (western European house mouse) strain AKR/J codon usage table)
• 18:38, 2 January 2010 Elyons talk contribs uploaded File:Mouse C57BL-6J chr2 codon usage table.png (Codon usage table from chromosome 2 of mouse mixed strain C57BL/6J)
• 06:18, 2 January 2010 Elyons talk contribs uploaded File:Genomic Feature Annotation.png (Example genomic feature annotation as presented by FeatView.)
• 05:58, 2 January 2010 Elyons talk contribs uploaded File:FeatView At1g01010.png (FeatView searching for genomic features that have the name "At1g01010".)
• 05:55, 2 January 2010 Elyons talk contribs uploaded File:FeatView home.png (Homepage for FeatView, CoGe's tool for finding genomic features by name or annotation.)
• 16:02, 30 December 2009 Elyons talk contribs uploaded File:SynMap DagChainer Options.png (SynMap's tab for specifying options for DAGChainer)
• 03:04, 30 December 2009 Elyons talk contribs uploaded File:SynMap select organisms.png (Selection boxes for specifying organisms in SynMap)
• 02:30, 30 December 2009 Elyons talk contribs uploaded File:Aa usage table for Alkalilimnicola.png (Amino acid usage table for Alkalilimnicola ehrlichei strain MLHE-1, a high GC gammaproteo bacteria. http://synteny.cnr.berkeley.edu/CoGe/OrganismView.pl?oid=23562)
• 02:28, 30 December 2009 Elyons talk contribs uploaded File:Codon usage table for Alkalilimnicola.png (Codon usage table for Alkalilimnicola ehrlichei strain MLHE-1, a high GC gammaproteo bacteria. http://synteny.cnr.berkeley.edu/CoGe/OrganismView.pl?oid=23562)
• 02:16, 30 December 2009 Elyons talk contribs uploaded File:Generate codon usage table.png (Generating a codon usage table with OrganismView)
• 00:24, 30 December 2009 Elyons talk contribs uploaded a new version of File:System framework.png (CoGe's web-tools system framework)
• 00:22, 30 December 2009 Elyons talk contribs uploaded a new version of File:System framework.png (CoGe's web-tools system framework)
• 00:16, 30 December 2009 Elyons talk contribs uploaded File:System framework.png (CoGe's web-tools system framework.)
• 22:00, 29 December 2009 Elyons talk contribs deleted page CoGe system design (content was: 'Image:CoGe system design.png|thumb|right|600px|Overview of CoGe's system design. Figure 1. CoGe’s system architecture. At CoGe’s core is a relational databa...' (and the only contributor was 'Elyons'))
• 21:58, 29 December 2009 Elyons talk contribs uploaded File:CoGe system design.png (Overview of CoGe's system design.)
• 20:16, 29 December 2009 Elyons talk contribs uploaded File:OrganismView database ids.png (Screen-shot of OrganismView with CoGe database ids shown and highlighted by red arrows.)