Main public logs

Combined display of all available logs of CoGepedia. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

• 04:09, 13 April 2010 Elyons talk contribs uploaded File:Master 8171 9084.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w1200.png (Syntenic dotplot of: Aspergillus oryzae strain RIB 40 (x-axis) versus Magnaporthe oryzae (rice blast fungus; y-axis). No discernible syntenic regions are detected. http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=8171;dsgid2=9084;c=4;D=20;g=10;A=5;)
• 04:07, 13 April 2010 Elyons talk contribs uploaded File:Aspergillua-oryzae-amino-acid-usage-table.png (Aspergillus oryzae amino acid usage table for all protein coding sequences. http://synteny.cnr.berkeley.edu/CoGe/OrganismView.pl?dsgid=8171)
• 04:05, 13 April 2010 Elyons talk contribs uploaded File:Aspergillua-oryzae-codon-usage-table.png (Aspergillua oryzae codon usage table for all protein coding sequences. http://genomevolution.org/CoGe/SynMap.pl?dsgid1=8171;dsgid2=7146;c=4;D=20;g=10;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder)
• 04:02, 13 April 2010 Elyons talk contribs uploaded File:42188 42187 42186 42185 42184 42183 42182 42181 42180 42179 42178 42177 42176 42175 42174 42173 42172 42171 42170 42169 42168 42167 42166 42165 42164 42163 42162 wobble gc.png (Aspergillus oryzae strain RIB 40 protein coding sequence GC3 (codon wobble position) content histogram. Counts are per sequences and binned according to the GC content of their GC3 codon wobble position. http://synteny.cnr.berkeley.edu/CoGe/OrganismView.p)
• 04:01, 13 April 2010 Elyons talk contribs uploaded File:42188 42187 42186 42185 42184 42183 42182 42181 42180 42179 42178 42177 42176 42175 42174 42173 42172 42171 42170 42169 42168 42167 42166 42165 42164 42163 42162 min CDS gc.png (Aspergillus oryzae strain RIB 40 protein coding sequence GC content histogram. Counts are per sequences and binned according to their GC content. http://synteny.cnr.berkeley.edu/CoGe/OrganismView.pl?dsgid=8171)
• 03:39, 13 April 2010 Elyons talk contribs uploaded File:Dotplot Aspergillus-oryzae versus flavus.png (Syntenic doplot of two Asptergillus species, oryzae and flavus. http://genomevolution.org/CoGe/SynMap.pl?dsgid1=8171;dsgid2=7146;c=4;D=20;g=10;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder)
• 18:37, 11 April 2010 Elyons talk contribs deleted page CDSEvo (content was: 'Image:CDSEvo-MG1655.png|thumb|right|600px|Screenshot of CDSEvo showing amino acid usage for all CDSs in Escherichia coli K12 MG1655. CDSs are binned according to ...' (and the only contributor was 'Elyons'))
• 16:27, 11 April 2010 Elyons talk contribs uploaded File:Plant-Paleotetraploidy-Events.png (Placement of paleopolyploidy events in the angiosperm lineage. Figure generated by Michael Freeling and used with his permission.)
• 16:18, 10 April 2010 Elyons talk contribs uploaded File:Syntenic dotplot grape version 1 versus v2.png (Syntenic dotplot of Vitis vinifera (grapevine) version 2 (x-axis) versus version 1 (y-axis). http://genomevolution.org/CoGe/SynMap.pl?dsgid1=9048;dsgid2=43;c=4;D=20;g=10;A=5;Dm=0;gm=0;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder)
• 02:13, 10 April 2010 Elyons talk contribs uploaded File:Syntenic dotplot medicago truncatula v2 vs v3.png (Syntenic dotplot of Medicago truncatual version 3 (x-axis) versus version 2 (y-axis). http://genomevolution.org/CoGe/SynMap.pl?dsgid1=8976;dsgid2=1635;c=4;D=20;g=10;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder;ct=inv)
• 01:10, 10 April 2010 Elyons talk contribs uploaded File:Grapevine-peach K2 historgram.png (Histogram of Ks values for syntenic gene pairs identified between grapevine and peach tree. http://genomevolution.org/CoGe/SynMap.pl?dsgid1=8400;dsgid2=43;c=4;D=20;g=10;A=5;Dm=0;gm=;w=0;b=1;ft1=1;ft2=1;ma=1;do1=1;do2=1;do=40;dt=geneorder;ks=1;am=g)
• 00:57, 10 April 2010 Elyons talk contribs uploaded File:Syntenic dotplot Prunus persica peach versus Vitis vinifera grapevine.png (Syntenic dotplot of Prunus persica (peach; x-axis) and Vitis vinifera (grapevine; y-axis). http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=8400;dsgid2=43;c=4;D=20;g=10;A=5;Dm=0;gm=;w=0;b=1;ft1=1;ft2=1;ma=1;do1=1;do2=1;do=40;dt=geneorder;ks=1;am=g)
• 00:55, 10 April 2010 Elyons talk contribs uploaded File:Master 8400 43.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.Dm0.ma1.gcoords ct0.w2000.gene.ks.png (Syntenic dotplot of Prunus persica (peach; x-axis) and Vitis vinifera (grapevine; y-axis). http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=8400;dsgid2=43;c=4;D=20;g=10;A=5;Dm=0;gm=;w=0;b=1;ft1=1;ft2=1;ma=1;do1=1;do2=1;do=40;dt=geneorder;ks=1;am=g)
• 23:30, 6 April 2010 Elyons talk contribs deleted page Phylogenentics in CoGe (wrong name)
• 20:32, 2 April 2010 Elyons talk contribs uploaded File:CDSEvo-atpa.png (Screenshot of CDSEvo showing amino acid usage for all CDSs with "ATPA" in their name across all genomes in CoGe. ATPA is one of the highly conserved subunits of ATP synthase. CDSs are binned according to their overall DNA GC content.)
• 20:30, 2 April 2010 Elyons talk contribs uploaded File:CDSEvo-MG1655.png (Screenshot of CDSEvo showing amino acid usage for all CDSs in Escherichia coli K12 MG1655. CDSs are binned according to their overall DNA GC content.)
• 18:36, 29 March 2010 Elyons talk contribs uploaded File:Master 7949 2465.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w1200.png (Syntenic dotplot of Plasmodium falciparum (x-axis) and Plasmodium knowlesi (y-axis).)
• 18:34, 29 March 2010 Elyons talk contribs uploaded File:Plasmodium knowlesi cds gc content histogram.png (Histogram of CDS GC content for Plasmodium knowlesi.)
• 18:31, 29 March 2010 Elyons talk contribs uploaded File:Plasmodium falciparum cds gc content histogram.png (Histogram of CDS GC content for Plasmodium falciparum)
• 18:28, 29 March 2010 Elyons talk contribs uploaded File:Plasmodium-codon-substitution-matirx.png (Log-odds score substitution matrix of codons between Plasmodium falciparum (x-axis) and Plasmodium knowlesi (y-axis))
• 21:50, 26 March 2010 Elyons talk contribs uploaded File:Human-mouse-tandem-gene-duplication.png (GEvo analysis showing a tandem gene duplication in human and mouse. http://genomevolution.org/r/g5)
• 20:48, 26 March 2010 Elyons talk contribs uploaded File:Master 43 43.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w1200.gene.png (Syntenic dotplot of grape versus itself. Each region of the grape genome is syntenic to two other intragenomic regions. This is evidence that grape is an ancient paleohexaploid. http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=43;dsgid2=43;c=4;D=20)
• 20:41, 26 March 2010 Elyons talk contribs deleted page File:Master 8154 8154.CDS-CDS.blastn.dag.go c4 D40 g20 A5.aligncoords.gcoords ct0.w2000.gene.ks.png (Deleted old revision 20100326204053!Master_8154_8154.CDS-CDS.blastn.dag.go_c4_D40_g20_A5.aligncoords.gcoords_ct0.w2000.gene.ks.png)
• 20:40, 26 March 2010 Elyons talk contribs uploaded a new version of File:Master 8154 8154.CDS-CDS.blastn.dag.go c4 D40 g20 A5.aligncoords.gcoords ct0.w2000.gene.ks.png (Syntenic dotplot of poplar against itself. http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=8154;dsgid2=8154;c=4;D=40;g=20;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder;ks=1;am=g)
• 20:37, 26 March 2010 Elyons talk contribs deleted page File:Master 8154 8154.CDS-CDS.blastn.dag.go c4 D40 g20 A5.aligncoords.gcoords ct0.w2000.gene.ks.hist.png (Deleted old revision 20100326203710!Master_8154_8154.CDS-CDS.blastn.dag.go_c4_D40_g20_A5.aligncoords.gcoords_ct0.w2000.gene.ks.hist.png)
• 20:37, 26 March 2010 Elyons talk contribs uploaded a new version of File:Master 8154 8154.CDS-CDS.blastn.dag.go c4 D40 g20 A5.aligncoords.gcoords ct0.w2000.gene.ks.hist.png (Histogram of synonymous mutation values of syntenic gene pairs identified within the genome of poplar. The two middle peaks are from its recent whole genome duplication event, and a more ancient paleohexaploidy event which is shared by all eudicots. htt)
• 20:32, 26 March 2010 Elyons talk contribs uploaded File:Master 8154 8154.CDS-CDS.blastn.dag.go c4 D40 g20 A5.aligncoords.gcoords ct0.w2000.gene.ks.hist.png (Histogram of synonymous mutation values for syntenic gene pairs between poplar and grape. Low values on left, high values on right. The two middle peaks are from the divergence of their lineages and their shared whole genome duplication event (eudicot p)
• 20:26, 26 March 2010 Elyons talk contribs uploaded File:Master 8154 8154.CDS-CDS.blastn.dag.go c4 D40 g20 A5.aligncoords.gcoords ct0.w2000.gene.ks.png (Syntenic dotplot of poplar (x-axis) verus grapevine (y-axis). Syntenic gene pairs are colored based on synonymous mutation values. http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=8154;dsgid2=8154;c=4;D=40;g=20;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;do1=1)
• 01:05, 19 March 2010 Elyons talk contribs uploaded File:Mimulus-Grape-segmental duplication.png (http://tinyurl.com/yc7csa5 Contains the paleohex on both lineages)
• 21:12, 16 March 2010 Elyons talk contribs uploaded File:Master 7029 7071.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w1200.png (Human-chimp syntenic dotplot. http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=7029;dsgid2=7071;c=4;D=20;g=10;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder)
• 18:19, 16 March 2010 Elyons talk contribs uploaded File:Phylogeny fr results.png (Final phylogenetic tree generated by phylogeny.fr)
• 18:16, 16 March 2010 Elyons talk contribs uploaded File:Phylogeny fr Tree rendering.png (Phylogeny.fr automatically rendering a phylogenentic tree using TreeDyn.)
• 18:12, 16 March 2010 Elyons talk contribs uploaded File:Phylogeny fr Muscle MSA.png (Phylogeny.fr automatically running MUSCLE for a multiple sequence alignment.)
• 18:09, 16 March 2010 Elyons talk contribs uploaded File:Phylogeny fr PhyML.png (Phylogeny.fr's one-click phylogenetics running PhyML maximum likelihood tree reconstruction.)
• 18:05, 16 March 2010 Elyons talk contribs uploaded File:FastaView-At1g02120-bad-translations.png (Protein translations in FastaView where all translation frames are shown. This is due to a protein not having an "M" in the start position and a stop in the end position. These sequences need to be removed before sending to phylogeny.fr)
• 18:02, 16 March 2010 Elyons talk contribs uploaded File:FastaView-At1g02120-homologs.png (Viewing protein sequences of identified homologs of At1g02120)
• 17:57, 16 March 2010 Elyons talk contribs uploaded File:CoGeBlast-At1g02120-hitselect.png (Selecting homologs in CoGeBlast to send to FastaView)
• 17:55, 16 March 2010 Elyons talk contribs uploaded File:CoGeBlast-At1g02120-eval.png (Evaluating a blast hit in Arabidopsis lyrata to Arabidopsis thaliana's At1g02120.)
• 17:52, 16 March 2010 Elyons talk contribs uploaded File:CoGeBlast-At1g02120.png (Searching for At1g02120 in CoGeBlast against plant genomes. )
• 17:49, 16 March 2010 Elyons talk contribs uploaded File:FeatView-At1g02120.png (FeatView search for At1g02120)
• 17:30, 14 March 2010 Elyons talk contribs deleted page Fort Lauderdale Convention. (content was: 'This document describes the consensus decisions made by a meeting organized by the Wellcome Trust held on 14-15 January 2003 at Fort Lauderdale to make policy recom...' (and the only contributor was 'Elyons'))
• 03:05, 12 March 2010 Elyons talk contribs uploaded a new version of File:Mimulus-vitis-segmental-evidence.png (grape regions are from paleohex. Pair of mimulus regions are fractionated to one of the grape regions. http://tinyurl.com/yezkzdv)
• 03:04, 12 March 2010 Elyons talk contribs uploaded File:Mimulus-vitis-segmental-evidence.png (The grape regions are derived from the paleo hex.)
• 23:33, 11 March 2010 Elyons talk contribs uploaded File:Pan-grass-genome-tree.png (Genome phylogeny of 4 grass taxa with sequenced genomes. Red stars indicated whole genome duplication events. Due to a pre-grass and maize specific whole genome duplication, there are 10 effective genomes represented.)
• 23:30, 11 March 2010 Elyons talk contribs uploaded File:Pan-grass-species-tree.png (Phylogeny of 4 grass taxa with sequenced genomes. Red stars indicated whole genome duplication events.)
• 02:36, 6 March 2010 Elyons talk contribs uploaded File:Master 3068 8.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.Dm0.ma1.qac1.1.40.gcoords ct0.w2000.ks.png (http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=3068;dsgid2=8;c=4;D=20;g=10;A=5;Dm=0;gm=0;w=0;b=1;ft1=1;ft2=1;ma=1;da=1;do1=1;do2=1;do=40;dt=geneorder;ks=1)
• 22:01, 5 March 2010 Elyons talk contribs uploaded File:Master 4822 4827.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.Dm0.ma1.qac1.1.40.gcoords ctinv.w500.box.png (http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=4822;dsgid2=4827;c=4;D=20;g=10;A=5;Dm=0;gm=0;w=0;b=1;ft1=1;ft2=1;bd=1;ma=1;da=1;do1=1;do2=1;do=40;dt=geneorder;ct=inv)
• 00:17, 5 March 2010 Elyons talk contribs uploaded File:Master 3507 3508.CDS-CDS.blastn.dag geneorder c4 D20 g10 A5.aligncoords.gcoords ctinv.w500.png (http://toxic.berkeley.edu/CoGe/SynMap.pl?dsgid1=3508;dsgid2=3507;c=4;D=20;g=10;A=5;Dm=0;gm=0;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder;ct=inv)
• 05:42, 22 February 2010 Elyons talk contribs uploaded File:TRNAView-results.png
• 05:41, 22 February 2010 Elyons talk contribs uploaded File:TRNAView-GenomeSearch.png