Main public logs

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• 21:12, 19 December 2010 Elyons talk contribs uploaded File:Screen shot 2010-12-19 at 2.20.50 PM.png (GEvo analysis of syntenic regions from Arabidopsis thaliana and Brassica rapa. Since the divergence of these linages, B. rapa has had subsequent triploidy cause each regions from A. thaliana to have 3 orthologous regions in rapa. http://genomevolution.or)
• 00:18, 10 September 2010 Elyons talk contribs uploaded File:Master 6807 8082.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w1200.gene.ks.hist.png (Histogram of synonymous mutation values generated by SynMap for syntenic genes between maize and sorghum. http://genomevolution.org/r/bay)
• 17:22, 2 September 2010 Elyons talk contribs uploaded File:10358 9561.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords.1-1.w800.ct inv.png (SynMap syntenic dotplot between Xenorhabdus nematophila strain ATCC 19061 (x-axis) and Yersinia pestis strain Z176003 (y-axis). http://genomevolution.org/r/qsd)
• 19:42, 28 August 2010 Elyons talk contribs uploaded a new version of File:SynSub data visualization rainbow.png
• 19:40, 28 August 2010 Elyons talk contribs uploaded a new version of File:SynSub arabidopsis lyrata versus thaliana rainbow.png
• 19:26, 28 August 2010 Elyons talk contribs uploaded File:SynSub data visualization RYB.png
• 19:26, 28 August 2010 Elyons talk contribs uploaded File:SynSub data visualization rainbow.png
• 19:23, 28 August 2010 Elyons talk contribs uploaded File:SynSub arabidopsis lyrata versus thaliana first RYB.png
• 19:22, 28 August 2010 Elyons talk contribs uploaded File:SynSub arabidopsis lyrata versus thaliana rainbow.png
• 18:56, 28 August 2010 Elyons talk contribs uploaded File:SynSub arabidopsis lyrata versus thaliana first pass.png
• 18:55, 28 August 2010 Elyons talk contribs uploaded File:SynSub arabidopsis lyrata versus thaliana refined.png (SynSub arabidopsis lyrata versus thaliana refined)
• 18:50, 28 August 2010 Elyons talk contribs uploaded a new version of File:SynSub data visualization refined.png
• 18:31, 28 August 2010 Elyons talk contribs uploaded a new version of File:SynSub data visualization refined.png
• 18:28, 28 August 2010 Elyons talk contribs uploaded a new version of File:SynSub data visualization fist pass.png
• 17:48, 28 August 2010 Elyons talk contribs uploaded File:SynSub data visualization refined.png (Visualization of a codon substitution matrix by SynSub after refining the table and the color gradient.)
• 17:46, 28 August 2010 Elyons talk contribs uploaded File:SynSub data visualization fist pass.png (First iteration of data visualization of a codon substitution matrix by SynSub )
• 00:33, 26 August 2010 Elyons talk contribs uploaded File:5251 5249 wobble gc diff.png (Schizosaccharomyces pombe 972h (http://genomevolution.org/CoGe/OrganismView.pl?dsgid=1483) histogram of percent GC content - percent GC content of wobble codon position of protein coding sequence.)
• 00:33, 26 August 2010 Elyons talk contribs uploaded File:5251 5249 wobble gc.png (Schizosaccharomyces pombe 972h (http://genomevolution.org/CoGe/OrganismView.pl?dsgid=1483) histogram of percent GC in codon wobble position of protein coding sequence.)
• 00:32, 26 August 2010 Elyons talk contribs uploaded File:5251 5249 min CDS gc.png (Schizosaccharomyces pombe 972h (http://genomevolution.org/CoGe/OrganismView.pl?dsgid=1483) histogram of percent GC content of protein coding sequence.)
• 00:27, 26 August 2010 Elyons talk contribs uploaded File:41589 wobble gc diff.png (Schizosaccharomyces japonicus strain yFS275 (http://genomevolution.org/CoGe/OrganismView.pl?oid=30548) histogram of percent GC content - percent GC content of wobble codon position of protein coding sequence.)
• 00:26, 26 August 2010 Elyons talk contribs uploaded File:41589 min CDS gc.png (Schizosaccharomyces japonicus strain yFS275 (http://genomevolution.org/CoGe/OrganismView.pl?oid=30548) histogram of percent GC content of protein coding sequence.)
• 00:26, 26 August 2010 Elyons talk contribs uploaded File:41589 wobble gc.png (Schizosaccharomyces japonicus strain yFS275 (http://genomevolution.org/CoGe/OrganismView.pl?oid=30548) histogram of percent GC in codon wobble position of protein coding sequence.)
• 00:12, 26 August 2010 Elyons talk contribs uploaded File:Schizosaccharomyces pombe 972h amino acid usage table.png (Schizosaccharomyces pombe 972h amino acid usage table. http://genomevolution.org/CoGe/OrganismView.pl?dsgid=1483)
• 00:11, 26 August 2010 Elyons talk contribs uploaded File:Schizosaccharomyces japonicus strain yFS275 amino acid usage table.png (Schizosaccharomyces japonicus strain yFS275 amino acid usage table. http://genomevolution.org/CoGe/OrganismView.pl?dsgid=7763)
• 00:08, 26 August 2010 Elyons talk contribs uploaded File:Schizosaccharomyces pombe 972h codon usage table.png (Codon usage table for Schizosaccharomyces pombe 972h. http://genomevolution.org/CoGe/OrganismView.pl?dsgid=1483)
• 00:06, 26 August 2010 Elyons talk contribs uploaded File:Schizosaccharomyces japonicus strain yFS275 codon usage table.png (Codon usage table for Schizosaccharomyces japonicus strain yFS275. http://genomevolution.org/CoGe/OrganismView.pl?dsgid=7763)
• 22:44, 25 August 2010 Elyons talk contribs uploaded File:Master 7763 1483.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w1200.ks.hist.png (Histogram of synonymous mutation rates for syntenic gene pairs identified between the Schizosaccharomyces fungi: japonicus strain yFS275 and pombe 972h. http://genomevolution.org/r/pi4)
• 22:39, 25 August 2010 Elyons talk contribs uploaded File:Master 7763 1483.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w1200.ks.png (SynMap syntenic dotplot of two Schizosaccharomyces fungi: japonicus strain yFS275 (x-axis) and pombe 972h (y-axis). http://genomevolution.org/r/pi4)
• 22:36, 25 August 2010 Elyons talk contribs uploaded File:GEvo-Schizosaccharomyces.png (GEvo analysis of syntenic regions from the Schizosaccharomyces fungi japonicus strain yFS275 (top) and pombe 972h- (bottom). Gene models are colored based on the percent GC content of GC3: http://genomevolution.org/r/pi7)
• 22:34, 25 August 2010 Elyons talk contribs deleted page File:Picture 1.png
• 22:33, 25 August 2010 Elyons talk contribs uploaded File:Picture 1.png (GEvo analysis of syntenic regions from the fungi Schizosaccharomyces japonicus strain yFS275 (top) and Schizosaccharomyces pombe 972h- (bottom). Gene models are colored based on the percent GC content of the wobble codon position (GC3): http://genomevolu)
• 05:07, 22 August 2010 Elyons talk contribs uploaded File:4416 9071.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords.1-1.w800.ct inv.png (Syntenic dotplot generated by SynMap of Micrococcineae: Kocuria rhizophila strain DC2201; NBRC 103217 (x-axis) and Xylanimonas cellulosilytica strain DSM 15894 (y-axis). Results can be regenerated at: http://genomevolution.org/r/ot3)
• 20:41, 21 August 2010 Elyons talk contribs uploaded File:Master 6946 6963.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ctinv.w500.png (Syntenic dotplot generated by SynMap between two strains of Sulfolobus islandicus: strain L.S.2.15 (x-axis); strain Y.G.57.14 (y-axis). Results can be regenerated at: http://genomevolution.org/r/osp)
• 20:37, 21 August 2010 Elyons talk contribs uploaded File:6963 3408.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords.1-1.w800.flip.ct inv.png (Syntenic dotplot generated by SynMap between two species of Sulfolobus: solfataricus strain P2 (x-axis); islandicus strain Y.G.57.14 (y-axis). Results can be regenerated at: http://genomevolution.org/r/osg)
• 20:32, 21 August 2010 Elyons talk contribs uploaded File:Master 8988 6963.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ctinv.w500.png (Syntenic dotplot generated by SynMap between two strains of Sulfolobus islandicus: L.D.8.5 (x-axis); Y.G.57.14 (y-axis). Results can be regenerated at: http://genomevolution.org/r/oso)
• 20:27, 21 August 2010 Elyons talk contribs uploaded File:Master 6948 6963.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ctinv.w500.png (Syntenic dotplot generated by SynMap between two strains of Sulfolobus islandicus: M.14.25 (x-axis); Y.G.57.14 (y-axis). Results can be regenerated at: http://genomevolution.org/r/osn)
• 20:02, 21 August 2010 Elyons talk contribs uploaded File:Master 6989 3415.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ctinv.w500.37423447.33394801.png (Syntenic dotplot generated by SynMap between two species of Thermococcus: gammatolerans strain DSM 15229; EJ3 (x-axis); onnurineus strain NA1 (y-axis). Results can be regenerated at: http://genomevolution.org/r/os7)
• 19:43, 21 August 2010 Elyons talk contribs uploaded File:7603 8665.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords.1-1.w800.ct inv.png (Syntenic dotplot generated by SynMap between two species of Methanocaldococcus: Methanocaldococcus fervens strain AG86 (x-axis); Methanocaldococcus sp. strain FS406-22 (y-axis). Results can be regenerated at: http://genomevolution.org/r/oro)
• 19:36, 21 August 2010 Elyons talk contribs uploaded File:Master 4385 4397.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ctinv.w500.8472575.25239415.png (Syntenic dotplot generated by SynMap of Oxalobacteraceae Herminiimonas arsenicoxydans (x-axis) and Janthinobacterium sp. strain Marseille (y-axis). Results can be regenerated at: http://genomevolution.org/r/orn)
• 19:30, 21 August 2010 Elyons talk contribs uploaded File:Master 10344 4385.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ctinv.w500.8472575.71771618.png (Syntenic dotplot of Betaproteobacteri Herbaspirillum seropedicae strain SmR1 (x-axis) and Herminiimonas arsenicoxydans (y-axis). Results can be regenerated at: http://genomevolution.org/r/orm)
• 19:14, 21 August 2010 Elyons talk contribs uploaded File:8442 10348.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords.1-1.w800.gene.ct inv.png (Syntenic dotplot generated by SynMap between two species of Erwinia: amylovora strain CFPB1430 (x-axis); billingiae strain Eb661 (y-axis). Results can be regenerated at: http://genomevolution.org/r/or4)
• 19:10, 21 August 2010 Elyons talk contribs uploaded File:8443 10348.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords.1-1.w800.gene.ct inv.png (Syntenic dotplot generated by SynMap between two species of Erwinia: amylovora strain ATCC 49946 (x-axis); billingiae strain Eb661 (y-axis). Results can be regenerated at: http://genomevolution.org/r/or3)
• 16:36, 4 August 2010 Elyons talk contribs uploaded File:Master 7043 10179.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ass.ks.hist.png (Histogram of Ks values between Brassica rapa and Arabidopsis thaliana. Ks values are log transformed, low values on left (little change); high values on right (more change). Peaks correspond to genome duplication events. Colors in this histogram match co)
• 16:29, 4 August 2010 Elyons talk contribs uploaded File:Master 7043 10179.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ass.ks.png (Syntenic dotplot between Brassica rapa and Arabidopsis thaliana. Syntenic gene-pairs are colored by Ks values. http://genomevolution.org/r/nty)
• 16:11, 4 August 2010 Elyons talk contribs uploaded File:Master 10179 10179.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ks.hist.png (Histogram of Ks values for syntenic gene pairs identified between Brassica rapa and itself. Colors in this histogram match colors in the syntenic dotplot. http://genomevolution.org/r/ntv)
• 16:07, 4 August 2010 Elyons talk contribs uploaded File:Master 10179 10179.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ks.png (Syntenic dotplot of Brassica rapa versus itself. Syntenic dots colored by Ks values. Strong evidence of Brassica rapa's triploidy. http://genomevolution.org/r/ntv)
• 02:25, 1 July 2010 Elyons talk contribs uploaded File:GEvo At2g29640-At1g7300.png (GEvo comparison of homeologous syntenic region from the genome of Arabidopsis thaliana. http://genomevolution.org/r/dwt)
• 15:27, 24 June 2010 Elyons talk contribs uploaded File:GEvo-Bt-konkukian pondicheriensis inversion-tRNA-cluster2.png (GEvo comparison of two Bacillus thuringiensis strains konkukian and pondicheriensis showing an inversion breakpoint with a cluster of tRNAs. Results can be regenerated at http://genomevolution.org/r/afa)
• 15:11, 24 June 2010 Elyons talk contribs uploaded File:GEvo-Bt-konkukian pondicheriensis inversion-tRNA-cluster.png (GEvo comparison of two Bacillus thuringiensis strains konkukian and pondicheriensis showing an inversion breakpoint with a cluster of tRNAs. http://genomevolution.org/r/af8)
• 14:55, 24 June 2010 Elyons talk contribs uploaded File:GEvo-Bt-konkukian pondicheriensis inversion.png (GEvo comparison of two Bacillus thuringiensis strains konkukian and pondicheriensis showing an inversion. http://genomevolution.org/r/af6)