Main public logs

Combined display of all available logs of CoGepedia. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

• 16:36, 4 August 2011 Elyons talk contribs uploaded File:Per base gc content.png
• 16:35, 4 August 2011 Elyons talk contribs uploaded File:Per base n content.png
• 16:35, 4 August 2011 Elyons talk contribs uploaded File:Per base sequence content.png
• 16:35, 4 August 2011 Elyons talk contribs uploaded File:Per sequence gc content.png
• 16:34, 4 August 2011 Elyons talk contribs uploaded File:Sequence length distribution.png
• 16:27, 4 August 2011 Elyons talk contribs uploaded File:Kmer profiles.png
• 16:19, 4 August 2011 Elyons talk contribs uploaded File:Preview of “lane3 NoIndex L003 R1 001.fastq FastQC Report”.png
• 16:14, 4 August 2011 Elyons talk contribs uploaded File:Lane3 NoIndex L003 R1 001.fastq FastQC Report.png
• 16:27, 27 July 2011 User account Jzhang talk contribs was created by Elyons talk contribs
• 22:20, 13 July 2011 Elyons talk contribs uploaded File:Master 8163 11942.CDS-CDS.lastz.dag.go c4 D30 g10 A2.aligncoords.gcoords ct0.w2000.ass2.cs1.csoS.nsd.png (Syntenic dotplot by [SynMap]. X-axis Oryza sativa japonica (Rice); Y-axis Phoenix dactylifera L. (date palm). Results may be regenerated: http://genomevolution.org/r/3qjn )
• 22:15, 13 July 2011 Elyons talk contribs uploaded File:Master 8163 11942.CDS-CDS.lastz.dag.go c4 D30 g10 A2.aligncoords.gcoords ct0.w2000.cs1.csoS.nsd.png (Syntenic dotplot Phoenix dactylifera L. (date palm) v. Oryza sativa japonica (Rice). http://genomevolution.org/r/3qjk)
• 20:34, 6 July 2011 Elyons talk contribs uploaded File:Screen shot 2011-07-06 at 1.41.02 PM.png (Syntenic dotplot between two substrains of E. coli K12 with various patterns of genome evolution marked. http://genomevolution.org/r/2vde)
• 18:22, 30 June 2011 Elyons talk contribs uploaded File:Master 11022 11937.CDS-genomic.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.cs1.csoS.nsd.png (SynMap syntenic dotplot between Arabidopsis thaliana ecotypes Columbia and L. erecta)
• 18:21, 30 June 2011 Elyons talk contribs uploaded File:Master 11022 11937.CDS-genomic.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ass.undefined.undefined.cs1.csoS.nsd.png (SynMap syntenic dotplot using syntenic path assembly of Arabidopsis thaliana ecotypes Columbia and L. erecta)
• 00:07, 24 June 2011 Elyons talk contribs uploaded File:Screen shot 2011-06-23 at 5.07.54 PM.png (GEvo analysis of an error with the syntenic path assembly. http://genomevolution.org/r/3nkf)
• 23:36, 23 June 2011 Elyons talk contribs deleted page Homopolymer sequences error (content was: 'Information from the Broad Institute: http://www.broadinstitute.org/crd/wiki/index.php/Sequencing_error' (and the only contributor was 'Elyons'))
• 23:33, 23 June 2011 Elyons talk contribs uploaded File:Screen shot 2011-06-23 at 4.19.47 PM.png (Screen shot showing PolyMFind's 10_NT_ALIGN column)
• 21:38, 23 June 2011 Elyons talk contribs uploaded File:PolyMFind-GEvo.001.png (Legend for a GEvo analysis generated by a link from PolyMFind.)
• 20:52, 6 May 2011 Elyons talk contribs uploaded a new version of File:Totalsequencedtree.png (As of May 2011 )
• 21:43, 31 March 2011 Elyons talk contribs uploaded File:Screen shot 2011-03-31 at 3.17.22 PM.png (GEvo analysis of Arabidopsis thaliana's complete mitochondria genome and a horizontal genome transfer into the pericentromeric region of chromosome 2. http://genomevolution.org/r/2sha)
• 15:54, 21 March 2011 Elyons talk contribs uploaded File:Peach-vs-columbine-syntenic-dotplot.png (Syntenic dotplot of peach (y-axis) versus columbine (x-axis). http://genomevolution.org/r/2obo )
• 15:19, 21 March 2011 Elyons talk contribs uploaded File:Eurosid-paleohexaploidy-phylogeny.png (Phylogeny of monocots, eudicots and possible evolutionary origin of the eudicot paleohexaploidy)
• 14:49, 21 March 2011 Elyons talk contribs uploaded File:Aquilegia formosa-scarlet columbine.png (Scarlet columbine; Aquilegia formosa. Loast Coast, California. Photo credit: Eric Lyons )
• 14:14, 18 March 2011 Elyons talk contribs uploaded File:SynMap Links and Downloads.png (Screen shot of SynMap links and Downloads box. )
• 13:56, 11 March 2011 Elyons talk contribs uploaded File:Screen shot 2011-03-11 at 8.18.15 AM.png (GRIMM results following rearrangement analysis of two Escherichia genomes.)
• 13:54, 11 March 2011 Elyons talk contribs uploaded File:Screen shot 2011-03-11 at 8.17.49 AM.png (Screen shot of GRIMM autopopulated when linked to from SynMap. GRIMM performs genomic rearrangement analyses.)
• 13:48, 11 March 2011 Elyons talk contribs uploaded File:Screen shot 2011-03-11 at 7.58.21 AM.png (Configuring a SynMap analysis to use Quota Align with a syntenic depth of 1:1)
• 13:44, 11 March 2011 Elyons talk contribs uploaded File:Screen shot 2011-03-11 at 7.58.04 AM.png (Syntentic dotplot between two species of Escherichia. X-axis: coli B strain REL606; Y-axis: fergusonii strain ATCC 35469. Results draw boxes around syntenic regions and contain link to to GRIMM for rearragement analysis. http://genomevolution.org/r/2nd)
• 02:01, 27 February 2011 Elyons talk contribs uploaded File:Screen shot 2011-02-26 at 7.29.40 PM.png (SynMap option to sort chromosomes by name in dotplot.)
• 01:57, 27 February 2011 Elyons talk contribs uploaded File:Cat-Leo.jpg (Cat. Brown tabby. Obvious vertical and horizontal orientation problems. )
• 01:34, 27 February 2011 Elyons talk contribs uploaded File:Dog-Friday.jpg (Dog. Mutt. Obvious genetic manipulations due to human selection.)
• 01:21, 20 February 2011 Elyons talk contribs uploaded File:800px-Grosser Panda.JPG (Giant Panda)
• 01:20, 20 February 2011 Elyons talk contribs uploaded File:YellowLabradorLooking new.jpg (Yellow Lab (dog))
• 00:59, 20 February 2011 Elyons talk contribs uploaded File:800px-Fugu in Tank.jpg (Takifugu rubripes (torafugu))
• 00:59, 20 February 2011 Elyons talk contribs uploaded a new version of File:Tetraodon.jpg (Tetraodon nigroviridis (green-spotted freshwater pufferfish))
• 00:57, 20 February 2011 Elyons talk contribs uploaded File:Tetraodon.jpg
• 00:50, 20 February 2011 Elyons talk contribs uploaded File:Screen shot 2011-02-19 at 6.17.08 PM.png (Syntenic dotplot by SynMap of panda (x-axis) versus dog (y-axis): http://genomevolution.org/r/2kbv)
• 00:42, 20 February 2011 Elyons talk contribs uploaded File:Screen shot 2011-02-19 at 6.09.11 PM.png (SynMap Syntneic path assembly of WGS giant panda genome to complete dog genome. http://genomevolution.org/r/2kbt)
• 20:32, 18 February 2011 Elyons talk contribs uploaded File:Screen shot 2011-02-18 at 1.58.23 PM.png (After running a syntenic path assembly in SynMap, there is an option to download the assembled sequence (contigs are joined using 100Ns).)
• 20:27, 18 February 2011 Elyons talk contribs uploaded File:Screen shot 2011-02-18 at 1.52.19 PM.png (Syntenic dotplot using SynMap between two puffer fish, Takifugu rubripes (x-axis) and Tetraodon nigroviridis (y-axis). Fugu is a WGS assembly. http://genomevolution.org/r/2k7b)
• 20:16, 18 February 2011 Elyons talk contribs uploaded File:Screen shot 2011-02-18 at 1.41.51 PM.png (Using SynMap's syntenic path assembly between two puffer fish, Takifugu rubripes (x-axis) and Tetraodon nigroviridis (y-axis). Fugu is a WGS assembly, and full syntenic coverage is detectable to Tetraodon. http://genomevolution.org/r/2k79)
• 20:12, 18 February 2011 Elyons talk contribs uploaded File:Screen shot 2011-02-18 at 1.38.59 PM.png (Selecting Syntenic Path Assembly in SynMap)
• 20:01, 18 February 2011 Elyons talk contribs uploaded File:Screen shot 2011-02-18 at 1.27.34 PM.png (SynMap analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis) using SynMap's Syntenic Path Assembly to order contigs: http://genomevolution.org/r/2k71)
• 19:58, 18 February 2011 Elyons talk contribs uploaded File:Screen shot 2011-02-18 at 1.24.54 PM.png (SynMap analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis): http://genomevolution.org/r/2k70)
• 21:25, 4 February 2011 Elyons talk contribs uploaded File:Master 8400 10997.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ks.cs1.nsd.hist.png (Histogram of synonymous mutation changes between syntenic gene pairs of chocolate and peach. Generated by SynMap: http://genomevolution.org/r/2i7f)
• 21:23, 4 February 2011 Elyons talk contribs uploaded File:Master 8400 10997.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ks.cs1.nsd.png (Syntenic dotplot between Prunus persica (peach; x-axis) and Theobroma cacao (chocolate; y-axis). Gene-pairs are colored based on evolutionary distances. http://genomevolution.org/r/2i7f )
• 13:46, 1 February 2011 Elyons talk contribs uploaded File:Master 3939 3940.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w500.ks.cs1.nsd.png (Syntenic dotplot between Chloroflexus aggregans strain DSM 9485 (x axis) and Chloroflexus aurantiacus strain J-10-fl (y axis) http://genomevolution.org/r/2hu7 . Syntenic gene pairs colored by Ks values.)
• 16:31, 26 January 2011 Elyons talk contribs uploaded File:Screen shot 2011-01-26 at 9.48.16 AM.png (High-resolution analysis of syntenic regions between Peach (top) and Cacao. http://genomevolution.org/r/2h9t)
• 16:21, 26 January 2011 Elyons talk contribs uploaded File:Master 8400 10997.CDS-genomic.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.cs1.png (Syntenic dotplot using SynMap of Cacao (y-axis) versus Peach (x-axis). Green are syntenic matches, gray is any match. Results can be regenerated at http://genomevolution.org/r/2h9j)
• 16:10, 26 January 2011 Elyons talk contribs uploaded File:Master 8400 10997.CDS-genomic.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.cs1.nsd.png (Syntenic dotplot of Cacao (y-axis) versus Peach (x-axis). http://genomevolution.org/r/2h98)