Source code

CoGe was developed at UC Berkeley and falls under their license which can be read at: http://ipira.berkeley.edu/page.php?nav=41

CoGe's software is divided into several components:

1. Database (mysql)
2. Database API (perl)
3. Genome Location Visualization: GeLo (perl)
4. Website and applications (perl, javascript, python, flash, HTML)
5. Other stuff: alignment algorithms, etc.

As documentation often lags behind development, much of CoGe's software is not in a suitable condition for release. However, once it has been, we will post its code here. Also, we will be happy to provide any code as requested and do our best to answer any questions you may have about it.

Download CoGe's genome visualization library GeLo

1. CoGePedia page
2. Tarball
3. Example implementation using the OpenGenes Genome Browser.