Syntenic gene sets

This page is dedicated for providing lists and menus of syntenic regions between various genomes. These lists are usually from publications in MS Excel format and provide links to populate the sequence submission form in GEvo. This will allow you to quickly start comparing syntenic regions of interest.

[Arabidopsis thaliana - Carica papaya]: At has had two tetraploidies while Cp has had none. (Prepared by the Paterson lab at the Plant Center at the University of Georgia and modified by the Freeling lab to include GEvo links.)

[Arabidopsis thaliana - Carica papaya - Vitis vinifera - Populus trichocarpa(2x)]: This list contains both syntenic regions for poplar from its most recent genome duplication event, but only a single for Arabidopsis. You can read the Rosids tutorial to learn how to manually find the other syntenic regions in Arabidopsis using this list as a starting point.

Oryza sativa japonica - Sorghum bicolor Os and Sb have a common tetraploidy common to grasses.