Aspergillus oryzae and flavus

Syntenic dotplot between two species/strains of Aspergillus: flavus (x-axis) and oryzae (y-axis). Black arrows point to syntenic discontinuities where there has been a discernible insertion or deletion in one genome. Red dashed lines highlight a pair of chromosomes that have possibly exchanged arms. While it is not possible to assign the event to either organism from this plot, it also could be the result of a genome assembly error. This analysis can be regenerated at: http://genomevolution.org/CoGe/SynMap.pl?dsgid1=8171;dsgid2=7146;c=4;D=20;g=10;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder .

Aspergillus oryzae strain RIB 40 protein coding sequence GC content histogram. Counts are per sequences and binned according to their GC content. Organism can be viewed at: http://synteny.cnr.berkeley.edu/CoGe/OrganismView.pl?dsgid=8171

Aspergillus oryzae strain RIB 40 protein coding sequence GC3 (codon wobble position) content histogram. Counts are per sequences and binned according to the GC content of their GC3 codon wobble position. Organism can be viewed at: http://synteny.cnr.berkeley.edu/CoGe/OrganismView.pl?dsgid=8171

Aspergillus oryzae codon usage table for all protein coding sequences.

Overview of genomes:

• Aspergillus oryzae strain RIB 40: http://genomevolution.org/CoGe/OrganismView.pl?dsgid=8171
• Aspergillus flavus strain NRRL3357: http://synteny.cnr.berkeley.edu/CoGe/OrganismView.pl?dsgid=7146