Maize B73 refgen version 1 (x-axis) and version 2 (y-axis). Version 1 has gene models and version 2 is using only genomic sequence. Syntenic pairs (dots) are colored green and blue if in the same or opposite orientation respectively. Analysis can be regenerated at http://genomevolution.org/r/4dq
Syntenic dotplot of maize B73 chromosome 3 between refgen version 1 and version 2. Syntenic gene-pairs (dots) are colored green and blue if in the same or opposite orientation respectively. Note the large inversion near the middle (blue line) and many smaller inversion (blue dots). Results can be regenerated by visiting the master dotplot (http://genomevolution.org/r/4dq) and clicking on the chromosome 3 versus chromosome 3 comparison.
