References

Here you can find a list of references to be cited whenever using a CoGe tool.

CoGe References

• Lyons E, Freeling M (2008) How to usefully compare homologous plant genes and chromosomes as DNA sequences. The Plant Journal 53:661-673
• E. Lyons, B. Pedersen, J. Kane, M. Alam, R. Ming, X.W. Tang, J. Bowers, A. Paterson, D. Lisch and M. Freeling, Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar and grape: CoGe with rosids, Plant Phys 148 (2008), pp. 1772–1781.

Tools Used in CoGe

• BLAST
• DAGChainer
• BlastZ
• ClustalW
• JalView
• NJPlot
• CHAOS
• DiAlign2

Genomes Used in CoGe

Unfortunately, due to the large number of genomes currently stored in CoGe, we cannot list all the references here. However, we are currently working on a system to automate the production of citations for searches. In the meantime, we urge you to find these citations on your own if you are to publish work based on data obtained from these genomes in addition to citing CoGe.