Cacao syntenic dotplots

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Master 8400 10997.CDS-genomic.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.cs1.nsd.png

Syntenic dotplot between Cacao and Peach genomes

The syntenic dotplot shows a strong 1:1 mapping of syntenic regions, and weaker 3:3 mappings of syntenic regions. This is due to the shared paleohexaploidy event at the base of the eudicots and the lack of subsequent whole genome duplications events in either lineage.