SynFind

Overview

SynFind identified syntenic regions against any set of genomes given a gene in one genome. The primary algorithm of this analysis is SyntenyScore written by Haibao Tang.

Options for Synteny Score

• Window Size: synteny window size [default: 40]
• Cutoff: the minimum number of anchors to call synteny [default: 0.1]
• Scoring Function: scoring scheme, must be one of ('collinear', 'density') [default: collinear]