GEvo bug Blast 2.2.25+
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Revision as of 06:45, 11 February 2012 by Elyons (Talk | contribs) (Created page with 'With extra HSP <pre> BLASTN 2.2.25+ Query= AT1G75520 Length=478 Subject= Bra008203 Length=17361 Score = 68.0 bits (35), Expect = 3e-14 Identities = 76/94 (81%), Gaps = ...')
With extra HSP
BLASTN 2.2.25+
Query= AT1G75520
Length=478
Subject= Bra008203
Length=17361
Score = 68.0 bits (35), Expect = 3e-14
Identities = 76/94 (81%), Gaps = 4/94 (4%)
Strand=Plus/Plus
Query 1 CTAGGTTTCGTGTTCCACTGATCAAAGATTTGAAAAAAAACATATACTTAGTAAACTTCA 60
|||||||| ||||||||||||||||||| || || ||||||| | |||||| |
Sbjct 9943 CTAGGTTTTGTGTTCCACTGATCAAAGAGTT----AAGAACATATTTCAATAAAACTTTA 9998
Query 61 AGCAATTTTTATATTACCCAATTGAATTTCTCCA 94
| |||||||||| |||||| |||||||||||||
Sbjct 9999 AATAATTTTTATACTACCCAGTTGAATTTCTCCA 10032
Score = 54.5 bits (28), Expect = 3e-10
Identities = 32/34 (95%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 442 TTGGCGTAGATGAATGTAAACGGATGGTAATATA 475
|||||||| |||||||||||||||| ||||||||
Sbjct 10342 TTGGCGTATATGAATGTAAACGGATAGTAATATA 10375
Score = 50.7 bits (26), Expect = 4e-09
Identities = 77/95 (82%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 129 ATATATATATACCCAACAACTGAGAAAAGATGGAAAAAGTTTAGTTAAAAACTGGTCCTG 188
||||||||||| |||||| || |||||||||||| || || ||||||||| | |
Sbjct 10072 ATATATATATAACCAACATCTCGGAAAAGATGGAACAAATT-AGTTAAAAAAA---CATT 10127
Query 189 GGCGGCTTTAAATTATATTTATGCACTTAAATTTA 223
||||||||||||| ||||| ||| | |||||||||
Sbjct 10128 GGCGGCTTTAAATCATATTCATGTA-TTAAATTTA 10161
Score = 48.8 bits (25), Expect = 2e-08
Identities = 47/58 (82%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 316 GGTTTTTACTTAGATAATATCGTGTCATTCCATCTAGATTCAACCCCTGTCTACAATA 373
|||||| ||| |||| |||| || || | | ||||||||||||||| |||||||||
Sbjct 10207 GGTTTTCACTGAGATGATATTGTTCCAGTTCCACTAGATTCAACCCCTCTCTACAATA 10264
Score = 25.7 bits (13), Expect = 0.15
Identities = 13/13 (100%), Gaps = 0/13 (0%)
Strand=Plus/Plus
Query 127 TAATATATATATA 139
|||||||||||||
Sbjct 7327 TAATATATATATA 7339
Without Extra HSP
BLASTN 2.2.25+
Query= AT1G75520
Length=479
Subject= Bra008203
Length=17361
Score = 69.9 bits (36), Expect = 7e-15
Identities = 77/95 (82%), Gaps = 4/95 (4%)
Strand=Plus/Plus
Query 1 ACTAGGTTTCGTGTTCCACTGATCAAAGATTTGAAAAAAAACATATACTTAGTAAACTTC 60
||||||||| ||||||||||||||||||| || || ||||||| | ||||||
Sbjct 9942 ACTAGGTTTTGTGTTCCACTGATCAAAGAGTT----AAGAACATATTTCAATAAAACTTT 9997
Query 61 AAGCAATTTTTATATTACCCAATTGAATTTCTCCA 95
|| |||||||||| |||||| |||||||||||||
Sbjct 9998 AAATAATTTTTATACTACCCAGTTGAATTTCTCCA 10032
Score = 54.5 bits (28), Expect = 3e-10
Identities = 32/34 (95%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 443 TTGGCGTAGATGAATGTAAACGGATGGTAATATA 476
|||||||| |||||||||||||||| ||||||||
Sbjct 10342 TTGGCGTATATGAATGTAAACGGATAGTAATATA 10375
Score = 48.8 bits (25), Expect = 2e-08
Identities = 47/58 (82%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 317 GGTTTTTACTTAGATAATATCGTGTCATTCCATCTAGATTCAACCCCTGTCTACAATA 374
|||||| ||| |||| |||| || || | | ||||||||||||||| |||||||||
Sbjct 10207 GGTTTTCACTGAGATGATATTGTTCCAGTTCCACTAGATTCAACCCCTCTCTACAATA 10264
Score = 25.7 bits (13), Expect = 0.15
Identities = 13/13 (100%), Gaps = 0/13 (0%)
Strand=Plus/Plus
Query 128 TAATATATATATA 140
|||||||||||||
Sbjct 7327 TAATATATATATA 7339
