Twig2Genome

Objective

Write a paper on the twig2genome concept: rapidly creating a usable low-quality draft assembly from a complex plant genome.

Methods

Genome assembly

Celera Assembly (Haibao Tang): http://genomevolution.org/CoGe/OrganismView.pl?dsgid=16855

Syntenic path assembly (SPA)

• To peach:
  • SynMap visualization with unassembled contigs: http://genomevolution.org/r/4hzq
  • SynMap visualization without unassembled contigs: http://genomevolution.org/r/4i6l
  • Link to SPA: http://data.iplantcollaborative.org/quickshare/6529f555a60aed63/creosote-CA-peach-SPA-10-20-2-8400-16855.tar.gz
    • Note: Reference and Pseudogenome labels are switched in log and AGP files.