Twig2Genome

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Contents

1 Objective
2 Methods
- 2.1 Genome assembly
3 Syntenic path assembly (SPA)

Objective

Write a paper on the twig2genome concept: rapidly creating a usable low-quality draft assembly from a complex plant genome.

Methods

Genome assembly

Celera Assembly (Haibao Tang): http://genomevolution.org/CoGe/OrganismView.pl?dsgid=16855

Syntenic path assembly (SPA)

To peach:
- SynMap visualization with unassembled contigs: http://genomevolution.org/r/4hzq
- SynMap visualization without unassembled contigs: http://genomevolution.org/r/4i6l
- Link to SPA: http://data.iplantcollaborative.org/quickshare/c84efbac1cc31a53/creosote-CA-peach-SPA-10-20-2-8400-16855.tar.gz

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