SynFind Syntenic Depth Examples

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Syntenic Dopltot Syntenic Depth Calculation Known History
1:1 syntenic depth
Obvious 1:1 orthologous regions.  Also has a "haze" of secondary synteny is due to the most recent vertebrate whole genome duplication even (1R).  There is an older whole genome duplication too (2R).

Obvious 2:2 depth.

Share a recent whole genome duplication. Also share older whole genome duplictions (at least one)

1:1 orthologous regions.  Secondary syntenic "haze" form 1R.
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