SynMap

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Overview

Specifying genomes

DAGChainer options

SynMap options

Calculating and displaying synonymous/non-synonymous (kS, kN) data

Interacting with results

Example Results

Syntenic dotplot between Arabidopsis thaliana and Arabidopsis lyrata. Syntenic gene pairs identified by DAGChainer have been colored based on their synonymous rate change as calculated by CODEML. Results can be regenerated here.
Histogram of synonymous rate change data for syntenic gene pairs between Arabidopsis thaliana and Arabidopsis lyrata.