Contact Page
Contact email for CoGe: coge.genome@gmail.com
Need Help? Contact us!
CoGe Team: Many thanks to many good people
Eric Lyons
- CoGe's Project Manager
- Assistant Professor
- School of Plant Sciences
- iPlant Collaborative Member
- Bio5 Institute at the University of Arizona, Tucson
- For CoGe related inquires: elyons.coge (@) gmail.com
Matt Bomhoff
- Lead CoGe Developer
- Developer for EPIC-CoGe Browser
- Developer for CoGe's User-Data Management System
Evan Briones
- CoGe Developer
- Developer for CoGe's Job Execution Framework (JEX)
Haibao Tang
- Senior Bioinformatics Engineer @ JCVI
- Developer of BaoTools: https://github.com/tanghaibao
- Developer of SynMap
- Developer of SynFind
- Developer of Quota Align algorithm in SynMap
- Developer of the synteny finding algorithm used in SynFind
Shabari Subramaniam
James Schnable
- Graduate Student
- Department of Plant and Microbial Biology
- University of California, Berkeley
- jschnable (@) berkeley.edu
Blake Joyce
- Postdoctoral Researcher
- University of Arizona School of Plant Sciences
- bjoyce3 (@) email.arizona.edu
- Adjunct Professor
- Pima Community College
- jblake@pima.edu
CoGe Development Testers
Michael Freeling
- Professor, PI of the CoGe Project
- Department of Plant and Microbial Biology
- University of California, Berkeley
- freeling (@) berkeley.edu
Damon Lisch
- Principal Investigator
- Department of Plant and Microbial Biology
- University of California, Berkeley
- dlisch (@) berkeley.edu
How to cite CoGe?
CoGe in General: Eric Lyons, Michael Freeling (2008) How to usefully compare homologous plant genes and chromosomes as DNA sequences The Plant Journal 53 (4) , 661-673
SynMap: Lyons E, Pedersen B, Kane J, Freeling M (2008) The value of nonmodel genomes and an example using SynMap within CoGe to dissect the hexaploidy that predates rosids. Tropical Plant Biol 1 (3-4) , 181-190
Syntenic Path Assembly: Lyons E, Freeling M, Kustu S, Inwood W (2011) Using Genomic Sequencing for Classical Genetics in E. coli K12. PLoS ONE 6(2): e16717. doi:10.1371/journal.pone.0016717
Who do I contact with comments, suggestions, bug reports, general questions, etc?
Eric Lyons: elyons.coge (@) gmail.com
Former Team Members
Roey Chasman
- CoGe Developer
- Developer for CoGe's internal usage monitoring
- Developer for EPIC-CoGe Browser
Brent Pedersen
- Developer of Gobe (visualization system used GEvo
- Developer of OpenGenes (navigation system used in visualization system for GenomeView)
- Much code work behind the scenes to get algorithms working quickly
Joshua Kane
- Graduate Student
- Tetrad Department
- University of California, San Francisco