How to load genomes into CoGe

You can load your own genome sequence, annotation, and quantitative data for use with CoGe's tools. These data may be kept private and shared with collaborators, or made fully public.

1. Register for a CyVerse user account if you don't have one: https://user.cyverse.org
   1. Add CoGe as a CyVerse Service:
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2. Log into CoGe: https://genomevolution.org
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3. Go to your User Profile Page by clicking My Data in the menu bar.
   
4. Click New -> New Genome
   
5. Follow this link for information on how to use LoadGenome.
   1. Once your genome is loaded into the system, you can add annotation and quantitative data to it using the LoadAnnotation and LoadExperiment features.
6. Note: Make sure your GFF file is in the correct format for CoGe: GFF ingestion
7. If you get an error when accessing the CyVerse Data Store, make sure that CoGe has been added as a service to your CyVerse account: https://user.cyverse.org
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