Difference between revisions of "CoGeBlast"

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The purpose of CoGeBlast is to blah blah use genomes blah.
 
The purpose of CoGeBlast is to blah blah use genomes blah.
  
=== Why ===
+
=== Alignment Algorithms ===
Because.
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CoGeBlast utilizes a number of variants of the BLAST algorithm originally developed by Altschul et al. <ref name="Altschul1990">{{cite journal |author=Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ |title=Basic local alignment search tool |journal=J Mol Biol |volume=215 |issue=3 |pages=403–410 |year=1990 |pmid=2231712 | url=http://www-math.mit.edu/~lippert/18.417/papers/altschuletal1990.pdf |doi = 10.1006/jmbi.1990.9999 }}</ref>
  
 
== Overview ==
 
== Overview ==
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=== Documentation ===
 
=== Documentation ===
 
You should read this if you are confused.
 
You should read this if you are confused.
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 +
==References==
 +
{{reflist}}
  
 
== Tutorials ==  
 
== Tutorials ==  
 
We has them.
 
We has them.

Revision as of 12:54, 3 March 2009

CoGeBlast
CoGeBlast-logo.png
Software companyCoGe Team
Analysis TypeBlast query sequences against genomes stored in CoGe database
Working stateReleased
Tools Utilizedblastn, tblastn, tblastx, blastz
Websitehttp://synteny.cnr.berkeley.edu/CoGe/CoGeBlast.pl

CoGeBlast is CoGe's interface to BLAST (Basic Local Alignment Search Tool) and other related algorithms. With CoGeBlast, one can take any query sequence, whether user submitted or requested from the CoGe database, and compare it against any number of genomes in the CoGe database


Introduction

The purpose of CoGeBlast is to blah blah use genomes blah.

Alignment Algorithms

CoGeBlast utilizes a number of variants of the BLAST algorithm originally developed by Altschul et al. [1]

Overview

We have docs for this

Documentation

You should read this if you are confused.

References

  1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990). "Basic local alignment search tool". J Mol Biol 215 (3): 403–410.doi:10.1006/jmbi.1990.9999. PMID 2231712. http://www-math.mit.edu/~lippert/18.417/papers/altschuletal1990.pdf. 

Tutorials

We has them.