Difference between revisions of "CoGeBlast"

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{{ infobox Application
{{ infobox Application
| logo = [[Image:CoGeBlast-logo.png]]
| logo = [[Image:CoGeBlast-logo.png]]
| screenshot = [[Image:CoGeBlast-Screenshot.png|200px|thumb]]
| screenshot = [[Image:CoGeBlast_Snapshot.png|200px|thumb]]
| caption = CoGeBlast Screenshot
| caption = CoGeBlast Screenshot
| developer = CoGe Team
| developer = CoGe Team

Revision as of 19:54, 3 March 2009

CoGeBlast Snapshot.png

CoGeBlast Screenshot
Software companyCoGe Team
Analysis TypeBlast query sequences against genomes stored in CoGe database
Working stateReleased
Tools Utilizedblastn, tblastn, tblastx, blastz

CoGeBlast is CoGe's interface to BLAST (Basic Local Alignment Search Tool) and other related algorithms. With CoGeBlast, one can take any query sequence, whether user submitted or requested from the CoGe database, and compare it against any number of genomes in the CoGe database


The purpose of CoGeBlast is to blah blah use genomes blah.

Alignment Algorithms

CoGeBlast utilizes a number of variants of the BLAST algorithm originally developed by Altschul et al. [1]


We have docs for this


You should read this if you are confused.


  1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990). "Basic local alignment search tool". J Mol Biol 215 (3): 403–410.doi:10.1006/jmbi.1990.9999. PMID 2231712. http://www-math.mit.edu/~lippert/18.417/papers/altschuletal1990.pdf. 


We has them.