Difference between revisions of "Glossary"
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A list of terms used in various pages in this wiki that may need clarification. | A list of terms used in various pages in this wiki that may need clarification. | ||
| − | ==Genomic Evolution Terminology == | + | == Genomic Evolution Terminology == |
| − | * [[Genomic Feature]] | + | |
| − | * [[Contig]] | + | *[[Genomic Feature]] |
| − | * [[Conserved Non-Coding Sequence]] ([[CNS]]) | + | *[[Contig]] |
| − | * [[High-scoring segment pair]] ([[HSP]]) | + | *[[Conserved Non-Coding Sequence]] ([[CNS]]) |
| − | * [[Synteny]] | + | *[[High-scoring segment pair]] ([[HSP]]) |
| − | * [[Whole Genome Duplication]] | + | *[[Synteny]] |
| − | * [[Homolog]] | + | *[[Whole Genome Duplication]] |
| − | * [[Homeolog]] | + | *[[Homolog]] |
| − | * [[Ortholog]] | + | *[[Homeolog]] |
| − | * [[Perfect Ortholog]] | + | *[[Ortholog]] |
| − | * [[Paralog]] | + | *[[Perfect Ortholog]] |
| − | * [[Out-Paralog]] | + | *[[Paralog]] |
| − | * [[In-Paralog]] | + | *[[Out-Paralog]] |
| − | * [[Syntelog]] | + | *[[In-Paralog]] |
| − | * [[Inversion]] | + | *[[Syntelog]] |
| − | * [[Local Gene Duplication]] | + | *[[Inversion]] |
| − | * [[Tandem Gene Duplication]] | + | *[[Local Gene Duplication]] |
| − | * [[Deletion]] | + | *[[Tandem Gene Duplication]] |
| − | * [[Transposition]] | + | *[[Deletion]] |
| − | * [[Insertion]] | + | *[[Transposition]] |
| − | * [[Diploidization]] | + | *[[Insertion]] |
| − | * [[Fractionation]] | + | *[[Diploidization]] |
| − | * [[Chromosome Rearrangement]] | + | *[[Fractionation]] |
| − | * [[Synonymous/Nonsynonymous Mutations (Ks/Kn)]] | + | *[[Chromosome Rearrangement]] |
| − | * [[Genespace]] | + | *[[Synonymous/Nonsynonymous Mutations (Ks/Kn)]] |
| − | * [[Subfunctionalization]] | + | *[[Genespace]] |
| − | * [[Neofunctionalization]] | + | *[[Subfunctionalization]] |
| − | * [[ | + | *[[Neofunctionalization]] |
| + | *[[Dotplot]] | ||
| + | *DNA alignment | ||
| + | *Protein alignment | ||
==Methodology== | ==Methodology== | ||
Revision as of 17:30, 16 September 2009
A list of terms used in various pages in this wiki that may need clarification.
Genomic Evolution Terminology
- Genomic Feature
- Contig
- Conserved Non-Coding Sequence (CNS)
- High-scoring segment pair (HSP)
- Synteny
- Whole Genome Duplication
- Homolog
- Homeolog
- Ortholog
- Perfect Ortholog
- Paralog
- Out-Paralog
- In-Paralog
- Syntelog
- Inversion
- Local Gene Duplication
- Tandem Gene Duplication
- Deletion
- Transposition
- Insertion
- Diploidization
- Fractionation
- Chromosome Rearrangement
- Synonymous/Nonsynonymous Mutations (Ks/Kn)
- Genespace
- Subfunctionalization
- Neofunctionalization
- Dotplot
- DNA alignment
- Protein alignment
Methodology
- Flanking Gene Method for detecting gene loss and transposition events
- Collinear Gene Order for detecting syntenic regions
- Useful divergence for comparing genomic regions
