Difference between revisions of "Glossary"

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== Genomic Evolution Terminology  ==
 
== Genomic Evolution Terminology  ==
  
*[[Biased fractionation]]
+
*[[Biased fractionation]]  
*[[Chromosome Rearrangement]]
+
*[[Chromosome Rearrangement]]  
 
*[[Conserved Non-Coding Sequence]] ([[CNS]])  
 
*[[Conserved Non-Coding Sequence]] ([[CNS]])  
*[[Contig]]
+
*[[Contig]]  
 
*[[Deletion]]  
 
*[[Deletion]]  
 
*[[Diploidization]]  
 
*[[Diploidization]]  
*[[DNA alignment]]
+
*[[DNA alignment]]  
*[[Dotplot]]
+
*[[Dotplot]]  
 
*[[Fractionation]]  
 
*[[Fractionation]]  
 
*[[Genespace]]  
 
*[[Genespace]]  
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*[[Ortholog]]  
 
*[[Ortholog]]  
 
*[[Out-Paralog]]  
 
*[[Out-Paralog]]  
*[[Paleopolyploid]]
+
*[[Paleopolyploid]]  
 
*[[Paralog]]  
 
*[[Paralog]]  
 
*[[Perfect Ortholog]]  
 
*[[Perfect Ortholog]]  
*[[Polyploid]]
+
*[[Plant paleopolyploidy]]
*[[Protein alignment]]
+
*[[Polyploid]]  
*[[Repeat sequence]]
+
*[[Protein alignment]]  
 +
*[[Repeat sequence]]
 +
*[[Segmental Duplication]]
 +
*[[Speciation]]  
 
*[[Subfunctionalization]]  
 
*[[Subfunctionalization]]  
*[[Synonymous/Nonsynonymous Mutations (Ks/Kn)]]  
+
*[[Synonymous/Nonsynonymous Mutations (Ks/Ka)]]  
 
*[[Syntelog]]  
 
*[[Syntelog]]  
 
*[[Synteny]]  
 
*[[Synteny]]  
*[[Tandem Gene Duplication]]
+
*[[Tandem Gene Duplication]]
 +
*[[Translocation]]
 
*[[Transposition]]  
 
*[[Transposition]]  
 
*[[Whole Genome Duplication]]
 
*[[Whole Genome Duplication]]
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* [[Flanking Gene Method]] for detecting gene loss and transposition events
 
* [[Flanking Gene Method]] for detecting gene loss and transposition events
 
* [[Useful divergence]] for comparing genomic regions
 
* [[Useful divergence]] for comparing genomic regions
 +
* [[Data visualization]]:  data abstraction for human perception
  
 
== Algorithm Terms ==
 
== Algorithm Terms ==
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* [[Local alignment]]
 
* [[Local alignment]]
 
* [[Score]]
 
* [[Score]]
 +
* [[Scoring Matrix]]
 
* [[Word size]]
 
* [[Word size]]
  
== API Terms ==
+
== Application Programming Interface (API) Terms ==
  
 
*[[Chromosome]]
 
*[[Chromosome]]
 
*[[Dataset]]
 
*[[Dataset]]
 
*[[Dataset group]]
 
*[[Dataset group]]
*[[Genomic Feature]]
+
*[[Genomic feature]]
*[[Organism]]
+
*[[Organism description]]
 +
 
 +
== CoGe Tools ==
 +
*[[CoGe NCBI Loader]]

Latest revision as of 11:47, 16 January 2015

A list of terms used in various pages in this wiki that may need clarification.

Genomic Evolution Terminology

Methodology

Algorithm Terms

Application Programming Interface (API) Terms

CoGe Tools