Difference between revisions of "Glossary"
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== Genomic Evolution Terminology == | == Genomic Evolution Terminology == | ||
| − | *[[Biased fractionation]] | + | *[[Biased fractionation]] |
| − | *[[Chromosome Rearrangement]] | + | *[[Chromosome Rearrangement]] |
*[[Conserved Non-Coding Sequence]] ([[CNS]]) | *[[Conserved Non-Coding Sequence]] ([[CNS]]) | ||
| − | *[[Contig]] | + | *[[Contig]] |
*[[Deletion]] | *[[Deletion]] | ||
*[[Diploidization]] | *[[Diploidization]] | ||
| − | *[[DNA alignment]] | + | *[[DNA alignment]] |
| − | *[[Dotplot]] | + | *[[Dotplot]] |
*[[Fractionation]] | *[[Fractionation]] | ||
*[[Genespace]] | *[[Genespace]] | ||
| Line 24: | Line 24: | ||
*[[Ortholog]] | *[[Ortholog]] | ||
*[[Out-Paralog]] | *[[Out-Paralog]] | ||
| − | *[[Paleopolyploid]] | + | *[[Paleopolyploid]] |
*[[Paralog]] | *[[Paralog]] | ||
*[[Perfect Ortholog]] | *[[Perfect Ortholog]] | ||
| − | *[[Polyploid]] | + | *[[Plant paleopolyploidy]] |
| − | *[[Protein alignment]] | + | *[[Polyploid]] |
| − | *[[Repeat sequence]] | + | *[[Protein alignment]] |
| + | *[[Repeat sequence]] | ||
| + | *[[Segmental Duplication]] | ||
| + | *[[Speciation]] | ||
*[[Subfunctionalization]] | *[[Subfunctionalization]] | ||
| − | *[[Synonymous/Nonsynonymous Mutations (Ks/ | + | *[[Synonymous/Nonsynonymous Mutations (Ks/Ka)]] |
*[[Syntelog]] | *[[Syntelog]] | ||
*[[Synteny]] | *[[Synteny]] | ||
| − | *[[Tandem Gene Duplication]] | + | *[[Tandem Gene Duplication]] |
| + | *[[Translocation]] | ||
*[[Transposition]] | *[[Transposition]] | ||
*[[Whole Genome Duplication]] | *[[Whole Genome Duplication]] | ||
| Line 42: | Line 46: | ||
* [[Flanking Gene Method]] for detecting gene loss and transposition events | * [[Flanking Gene Method]] for detecting gene loss and transposition events | ||
* [[Useful divergence]] for comparing genomic regions | * [[Useful divergence]] for comparing genomic regions | ||
| + | * [[Data visualization]]: data abstraction for human perception | ||
== Algorithm Terms == | == Algorithm Terms == | ||
| Line 48: | Line 53: | ||
* [[Local alignment]] | * [[Local alignment]] | ||
* [[Score]] | * [[Score]] | ||
| + | * [[Scoring Matrix]] | ||
* [[Word size]] | * [[Word size]] | ||
| − | == API Terms == | + | == Application Programming Interface (API) Terms == |
*[[Chromosome]] | *[[Chromosome]] | ||
| Line 56: | Line 62: | ||
*[[Dataset group]] | *[[Dataset group]] | ||
*[[Genomic feature]] | *[[Genomic feature]] | ||
| − | *[[Organism]] | + | *[[Organism description]] |
| + | |||
| + | == CoGe Tools == | ||
| + | *[[CoGe NCBI Loader]] | ||
Latest revision as of 11:47, 16 January 2015
A list of terms used in various pages in this wiki that may need clarification.
Contents
Genomic Evolution Terminology
- Biased fractionation
- Chromosome Rearrangement
- Conserved Non-Coding Sequence (CNS)
- Contig
- Deletion
- Diploidization
- DNA alignment
- Dotplot
- Fractionation
- Genespace
- Genomic Feature
- High-scoring segment pair (HSP)
- Homolog
- Homeolog
- Insertion
- In-Paralog
- Inversion
- Local Gene Duplication
- Neofunctionalization
- Ortholog
- Out-Paralog
- Paleopolyploid
- Paralog
- Perfect Ortholog
- Plant paleopolyploidy
- Polyploid
- Protein alignment
- Repeat sequence
- Segmental Duplication
- Speciation
- Subfunctionalization
- Synonymous/Nonsynonymous Mutations (Ks/Ka)
- Syntelog
- Synteny
- Tandem Gene Duplication
- Translocation
- Transposition
- Whole Genome Duplication
Methodology
- Collinear Gene Order for detecting syntenic regions
- Flanking Gene Method for detecting gene loss and transposition events
- Useful divergence for comparing genomic regions
- Data visualization: data abstraction for human perception
