Difference between revisions of "Glossary"

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A list of terms used in various pages in this wiki that may need clarification.
 
A list of terms used in various pages in this wiki that may need clarification.
  
== Comparative Genomics Terms ==
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== Genomic Evolution Terminology  ==
* [[High-scoring segment pair]] ([[HSP]])
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* Synteny
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*[[Biased fractionation]]
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*[[Chromosome Rearrangement]]
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*[[Conserved Non-Coding Sequence]] ([[CNS]])
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*[[Contig]]
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*[[Deletion]]
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*[[Diploidization]]
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*[[DNA alignment]]
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*[[Dotplot]]
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*[[Fractionation]]
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*[[Genespace]]
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*[[Genomic Feature]]
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*[[High-scoring segment pair]] ([[HSP]])  
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*[[Homolog]]
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*[[Homeolog]]
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*[[Insertion]]
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*[[In-Paralog]]
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*[[Inversion]]
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*[[Local Gene Duplication]]
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*[[Neofunctionalization]]
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*[[Ortholog]]
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*[[Out-Paralog]]
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*[[Paleopolyploid]]
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*[[Paralog]]
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*[[Perfect Ortholog]]
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*[[Plant paleopolyploidy]]
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*[[Polyploid]]
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*[[Protein alignment]]
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*[[Repeat sequence]]
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*[[Segmental Duplication]]
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*[[Speciation]]
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*[[Subfunctionalization]]
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*[[Synonymous/Nonsynonymous Mutations (Ks/Ka)]]
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*[[Syntelog]]
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*[[Synteny]]
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*[[Tandem Gene Duplication]]
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*[[Translocation]]
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*[[Transposition]]
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*[[Whole Genome Duplication]]
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 +
==Methodology==
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* [[Collinear Gene Order]] for detecting syntenic regions
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* [[Flanking Gene Method]] for detecting gene loss and transposition events
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* [[Useful divergence]] for comparing genomic regions
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* [[Data visualization]]:  data abstraction for human perception
  
 
== Algorithm Terms ==
 
== Algorithm Terms ==
* [[Word size]]
 
 
* [[E-value]]
 
* [[E-value]]
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* [[Global alignment]]
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* [[Local alignment]]
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* [[Score]]
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* [[Scoring Matrix]]
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* [[Word size]]
  
== API Terms ==
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== Application Programming Interface (API) Terms ==
  
 
*[[Chromosome]]
 
*[[Chromosome]]
 
*[[Dataset]]
 
*[[Dataset]]
*[[Feature]]
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*[[Dataset group]]
*[[Organism]]
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*[[Genomic feature]]
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*[[Organism description]]
 +
 
 +
== CoGe Tools ==
 +
*[[CoGe NCBI Loader]]

Latest revision as of 11:47, 16 January 2015

A list of terms used in various pages in this wiki that may need clarification.

Genomic Evolution Terminology

Methodology

Algorithm Terms

Application Programming Interface (API) Terms

CoGe Tools